Pimephales promelas (fathead minnow): 120472223
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Entry
120472223 CDS
T08155
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120472223 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120472223 (prpf4)
Spliceosome [BR:
pprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120472223 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Beta-prop_SPT8
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
120472223
NCBI-ProteinID:
XP_039518239
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MSDDDEVPQVKRARIFYGSLEEKEKERLSRLSRDGPSTKDAVKAGIDSGHINISSGESME
MEERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPADRRERLR
NVLSVVGPDALKKSKKEDDKSKRSQDEYQQTWYHEGSASLKEARLWLAKYSLPRAVQRLD
AARAQKEIPESTRTVKQQELHKNLRNVNNFCSQIGDDRPISHCQFSPNSKLLVTASWSGL
CKLWKVPDCTLIRTLRGHSSNVGAISFHPQATLTLEESDVNMASCAVDGSVKLWSLDSDE
PIADIEGHSKRVAQVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFH
PDGSLAGTGGLDSFARVWDLRTGRCIMFLEGHLKEIYSLNFSPNGFHVATGSGDNTCKVW
DLRHRRCMYTIPAHQNLLSSVKFQPNDGHYLLTGAYDNTAKVWTHPGWSPLKTLAGHEGK
VMGLDLSPDGQLIATCSYDRTFKLWMAE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgatgatgaagttccacaggtgaaaagggccagaatcttctacggaagcctt
gaagaaaaggagaaggagcgccttagtcgtcttagccgtgatggaccatctaccaaagat
gctgttaaagctggcattgattctggacatattaatatctccagtggtgagtccatggag
atggaggagcgcgtgagtgagcgtcaagctgaagtgctggcagagtttgagcgcagaaaa
agagccagacaaatcacagtctccactgacgatgtggaggtcaaggcctgcctccgagct
cttggcgagccaatcacgctgttcggggaggggcccgcggacagacgagagagattgagg
aacgttctttcagtagttggtcctgatgccttgaagaaatcaaagaaagaggatgacaaa
tcgaaacgctctcaagatgagtatcagcagacatggtaccatgaaggatctgcatctctg
aaggaggcacgtctttggttagccaagtattcactgcccagagcagtgcaaaggttagat
gctgcaagggcccaaaaagagattccagagtctacgagaacagttaaacaacaagagctt
cacaagaacctccggaatgtgaataacttctgcagtcaaattggagatgaccgtccaata
tctcactgccagtttagccccaactctaagctgcttgtgactgcatcatggagtggcttg
tgtaaattgtggaaagttccagattgtacgctaattcgcacgttaagaggtcacagtagc
aacgtgggagcgattagctttcaccctcaagccacactcacacttgaggagtcggatgtc
aatatggcctcctgtgctgttgatggatctgttaagctgtggagtttagacagtgatgag
ccaatagcagacattgaggggcactctaagagggtggctcaggtggcctggcatccctct
ggacgatttttgggcacaacttgctatgataactcatggagactttgggatctagaggtc
caagaagaaattctgcatcaggagggtcacagtaaaggtgtccatgacctgcacttccac
ccagacggctctctggcaggaactggtggtttggattcatttgctcgtgtctgggacctt
cggactggtcgctgcatcatgttcctggagggccacctcaaagagatctacagcctcaat
ttctcaccaaatggctttcatgtggcaacaggaagtggcgataacacctgtaaagtgtgg
gaccttcgtcatagaaggtgtatgtacacaatccctgcccatcagaacctcttgtcctca
gtcaagttccaacctaacgatggccattatttgctgactggtgcatatgacaacacagca
aaagtgtggacccatcctggctggtcacctctgaagactctggcggggcatgaggggaag
gtcatgggactggacctttcacctgacggacagctcattgcaacctgctcttatgaccga
accttcaaactctggatggcagaatga
DBGET
integrated database retrieval system
