Pimephales promelas (fathead minnow): 120472230
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Entry
120472230 CDS
T08155
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120472230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120472230
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
120472230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_1
TPR_14
TPR_16
TPR_8
TPR_17
TPR_11
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_6
TPR_MalT
Fis1_TPR_C
ARM_TT21_N
ARM_TT21_2nd
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_21
TPR_Slam
TPR_COPA_B
PknG_TPR
TPR-S
Coatomer_E
TPR_15
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
120472230
NCBI-ProteinID:
XP_039518247
LinkDB
All DBs
Position
Unknown
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQLDQAQ
IAYRKATELEPEQLLAWQGLANLYEKGDQADFKAELPKIYQKLITLYEISDKAKCFEVSK
KLVEISQSEKNYLQVARVWRRLIQMKEGEEGVEDSELLELWKEMTRLLQDTIEDQDNETQ
QHLISAFERALEMTVDVPSEAHSSLSQDYIKCLSKLPHEVAKLKEFCDATLSCYPTQSYP
LEALSEHYILTGDFSEEAVRCFQRLSELDPNSSHAHFGLGIKACQDKKYEDALKSIGLGL
KRMRSSCIGWYNLALAQLKMHTYSDSATSSSQGLKSSVGNSDDWTQKLQRLRLDALVRTG
RDQDADEALQILTQISDAKNDPVLLALKGRAHLQKGQTDEAFQVFAELLNSHPGSVEGLT
LKGLTHVAKEQLKQAEESFLEALSRSSDNGELYFLLGRLYWNMGEEMQRDRSKAHTHLLK
AAKLEPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAEAGAATVDLSMEQGDM
DPALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECL
GDAYLNRRSFTAALKAFDKAHHLQPTSIYSLYQTAAIKQNLGRFKEAASEYRQILEQEDY
VPALKGLGECLLALAKSALDDYLDGRAVDLIQNAIHYLFSAVKQRPDLSCLWKILGDVCT
TCKTVSTNRAKVLVPGALCGMDPADQSHTLDQRQLLTLGERCFGHALKLMPEAPSLWCDL
GMNYYHQSRLLSCLFPEEDPQPLLEKALQCVKKAIMLDSANYKYWNALGVIAMAKGIENF
ALAQHSFIKSIKAESNNVVAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQAF
IAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSNRDSELYLYNIVQMNAVS
AAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQASPHTDKLSFAL
RGYGRALSDDGHLEEAVRIYSSTPLDELHDLIGLALTCFKISRLPESIQAYEKALAVASS
EKEKACILTALALIQHTLGSMDHAKTLLFKCSMLKEPIPESLQCLCALGLVHGDVTLASA
TLTELLKLGEPVGGAVEEYCLLTCTLLALQGNFSGVHREASRAIHRNPGNPSLWALLSRL
VPQYCPNKANGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRCNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLAGSAPRREDLERAHMTLVSEKVKGLQGEDGLLA
QALEGWVLQQAVTGLKQSGQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCEHLLLSEAGN
CVPQAVLDQLSAAVMANPTSVSAWHWLAEVYRSQSLLAQASVAYRRSLQLASQLGDHGGK
MSSLLRLALLALTPCLAGVSVSEWKDLVLEASAEVLKMGNSPVALLFQALLQFSIKMGSR
ETRRLLERIVYGSASGSSETIASVACWYLLRHLHAKDDLELIDTLLLKATAAGDSRLVDF
HRRLYPSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtgaaagctgagctgaaaagtgcaagagaagccattaaaaataaa
gagtttaaagaagctttgaaacattgtaaggctgttctcaagcttgagaagaataactac
aatgcctgggtgttcattggagtggcagccacagagctgcagcagctggatcaggcacag
atcgcctacagaaaggctactgaactggagccagagcaactgctggcatggcagggttta
gcaaatttgtacgaaaaaggtgaccaggcagatttcaaagccgagctgcccaagatttac
cagaaacttattacactgtatgaaatctcagacaaagcaaaatgtttcgaagtgagcaag
aagttggtggaaatctctcagtcggagaagaactatttacaggtggccagagtgtggcgg
aggttaatccagatgaaggagggagaggaaggggtggaggattcagagctgctggagctg
tggaaggagatgaccagactcctgcaagacactattgaggatcaggacaatgagactcag
cagcacctgatatcagcatttgaaagagctttggaaatgacagtagatgtgcccagtgaa
gcccacagcagtctctcacaggattacattaaatgtctttctaagcttcctcatgaggtg
gccaagctaaaagagttttgtgatgccacactgtcctgctatccaacacaatcctaccct
ctagaggccctcagtgagcactacatcttaacaggtgacttcagtgaggaagctgtccgt
tgtttccaacgtctctcagaactggatcctaacagctcacatgctcactttggtcttggt
attaaagcttgtcaggataagaaatatgaggacgccctcaaaagtatcggtctgggactg
aagcgtatgcgttcttcctgcattggatggtataatcttgctctggctcaactaaaaatg
catacatactctgacagtgccacatcttccagccaagggctgaagtcgagtgtggggaat
tctgatgattggactcagaagctgcagaggttgagattagatgctctggtgaggacagga
agagaccaggatgctgatgaagctctgcagatacttacacagatttcagatgccaaaaat
gacccagtgcttttagcattgaaaggaagagctcacttgcaaaaaggtcaaactgatgaa
gcatttcaggtttttgctgagctgctaaactctcacccaggatctgtggagggtctcact
ctgaaggggctgacgcatgttgctaaagaacagctcaaacaagctgaggagagctttctg
gaggctttatccagaagctcagataatggggagttatatttcttgctgggtcgtctctac
tggaacatgggagaggaaatgcaaagggaccgaagcaaagcccatacacatttgctcaag
gctgctaaactggagccgtatcttggttcggtgtttcgtttcctgggtcattactacagg
gaggtggcaaaggatcaggggagagccagaggctgctataagagagcatttgagctggat
tcctctgatgcagaggctggagcggctactgtagatctcagtatggagcagggagacatg
gacccagctctgactgttctgcagtctgtgacggagagagccactcctggctctgctaaa
tgggcctggatgaggagaggtctctaccacctcaagattggccagcaccaacaggccatt
gcagatctgcaggcggcgttgagggctgatcctcaggactgggtgtgctgggaatgttta
ggtgacgcttacctgaaccgcaggagtttcacagctgctctgaaagccttcgataaagca
catcatcttcagcccacctctatctatagcctctatcagacggccgccattaaacagaac
ctgggccggtttaaagaggctgcgtccgagtacaggcagatcttagagcaggaggactat
gtgccggcactgaaaggtctgggtgaatgcttgttagccttggctaaaagtgctctggat
gactatcttgatggaagagctgtagatctgatacagaatgccatccattacctcttcagt
gctgtaaagcaaaggccagacctgtcatgtctgtggaagatactaggtgatgtctgcaca
acctgcaaaactgtgtccactaaccgagccaaagtgctggtacctggagctctatgtggg
atggatccagccgatcagagccatacactggaccagagacagctcctcaccctcggagaa
aggtgctttggtcatgcattgaaactcatgccggaggcccccagtctgtggtgtgacctt
ggcatgaactactaccaccaatccagactcctcagctgcttgtttcctgaggaggatccc
cagcctctgctggagaaagccctgcagtgtgtgaagaaggcgatcatgctggacagtgct
aattacaaatactggaacgcccttggggtcatcgcaatggcaaaaggaatagagaacttt
gcacttgcacaacacagtttcatcaaatcaataaaagctgagtctaataatgtggttgca
tggactaaccttggtgctttgtatctgaagaagggaaacatagagctctctcatgaagct
ttcaagattgctcagtcgctagagcccctctatgtgaactgctggatcggacaggccttc
attgctgagactgttggcagttatgacaccatggaccttttcagacacaccacagaactg
agcactcatactgagggagtgaagggttacgcgtactgggtttgctccacactgctggac
aggagcaacagagactcggagctctacctctacaacatagttcagatgaacgccgtctct
gctgcccaggtggctctgagcaagtacactgagaggattcagaccgaccctgacgccttc
atcatgctcggatacctgaacacacacctgcagctgaagaaacaggccactgaggcatat
cgcagagctgtcgagttgcttcaggcgtcccctcacacagacaagctcagctttgctttg
aggggttacggacgtgccctcagtgatgatgggcatttggaagaagccgtgcgtatttat
tcctccacaccactggatgagctgcatgatctcatcgggctggcgctcacctgtttcaaa
atcagtcgcctgccagagagcattcaggcttatgagaaagcccttgcagttgcctctagt
gagaaagaaaaggcctgtatacttactgcactggcactgatacagcacacgctgggcagc
atggatcatgccaaaacgcttctcttcaagtgctccatgcttaaagagcccattccagag
agcctgcagtgtctctgtgctctgggtttggttcatggtgacgtgaccctggcaagtgct
acgctcaccgagctgctgaaactgggggaacctgtaggaggcgctgtggaggagtactgt
ctgctcacttgcaccctgctggccctgcagggcaactttagcggtgtacatagggaggct
tctagagctatacacaggaacccagggaatccatctctctgggctcttctctccagactg
gtcccacagtactgccccaacaaagctaatggaggagctgtggccggcagtgtggcatgt
catgccagcttgacacttggaaagagggcgttgctgtacagtggagtgaatcagttggcc
tcaggccgccactctggtgaggacagaagatgcaacgctctgaaaacaatccagagagct
gtgctgctgtgcccagatgatcctgctggttgggcggggctaatggccgcctgtcacaca
gagaacactgcatgcttactcgcaggctccgcccctcgcagagaagatctggagagggcg
cacatgactctggtgtctgaaaaagtgaagggcctgcagggggaggacgggctcttggct
caggctctggagggctgggtcctgcagcaggccgtgactggactcaaacagagtggtcaa
tatgaccaggcagaaactctttgctcccaggttctgagtgtatctccagagcatcctgtg
gttttcctgatgttgaggcaggttcagtgtgagcatctcctgctgtctgaggccggaaac
tgtgttcctcaagcggtgctggatcagctcagtgctgctgtcatggccaaccccacttct
gtgtctgcctggcactggttggcagaagtgtaccgctctcagagtctgctggctcaggcc
tctgtggcttatagacggagtcttcagctggcgtctcagctgggtgaccacggcgggaag
atgagcagcctgctccggctagccctgctggcactaacgccatgtttggctggtgtctct
gtctctgagtggaaggatctggtgttggaagccagtgctgaagtcttaaaaatgggcaac
tcaccagtagctttgctcttccaagccttactgcagttctccataaaaatgggctccagg
gaaacccgtcgcctgttggagaggattgtttatggttcagcctcaggcagctctgaaact
atagcgtcggtggcatgttggtacctcctgcgtcacctgcacgccaaagatgacctggag
ctgattgataccctgttgttgaaggctactgcagcaggagacagcagactggtggatttc
cacagacgcctttacccatccagctga
DBGET
integrated database retrieval system
