Pimephales promelas (fathead minnow): 120472243
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Entry
120472243 CDS
T08155
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120472243
Cell adhesion molecules [BR:
pprm04515
]
Immunoglobulin superfamily
ROBO family
120472243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
V-set
C2-set_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
Ig_C17orf99
Ig_4
Ig_J_second
VID27_N
Motif
Other DBs
NCBI-GeneID:
120472243
NCBI-ProteinID:
XP_039518267
LinkDB
All DBs
Position
Unknown
AA seq
1650 aa
AA seq
DB search
MTGRIIGIVFFIAVLHVCTGSRLRQEDFAPRIVEHPSDLIVSKGEPATLNCKADGKPNPT
VEWYKDGERVETDRDNPRSHRMLLPSGSLFFLRIVHGRRSKPDEGSYVCVARNYLGEAVS
HNASLEVAILRDDFRQNPVDVMVAAGEPAVMECQPPRGHPEPTISWKKDGVTIDDRDERI
TIRGGKLMITNTRKTDAGKYVCVGTNMMGERESEIAELTVLERPSFLRKPSSQSVLVDQS
VEFRCEAQGDPVPTIRWRKEDGDLPKGRHEIWEDHTLKLKRLTSGDAGTYTCQAENMMGK
TEASATLTVHVMSVPPVFVVRPRNQVAGMGRTVTFQCEATGSPQPAIFWQKEGSQNLLFS
SQPPPPSSRFSVSQTGDLTITAVERSDGGYYSCQALNIAGSVITKALLEVTDVISDRPPP
IVRQGPTNQTVAVDGTVVLGCQATGTPSPTILWRKDGVLVSTHDSRLKQLDTGALQIRYA
KLGDTGTYTCTASTPSGEASWKAYLEVQEFGSPVQPGRPTDPNLIPSAPSKPEVTDVSRT
SVSLSWKPNLNTGATPTSYVIEAFSHAAGSSWQTLADHVKTESFVLKNLKPSAVYLFLVR
AANAYGLSDPSPISDAVKTQDVPPTSQGVEHGQIQRELGDVVIHLHNPTILSSSSVRVQW
TVEQQSQYIQGYKVMYRPSPEGAQQRVEWGMFEVRTLGEHSAVVTQLKKGVTYEFKVRPF
FNEFQGTDSDIKVGKTLEEAPSAAPRGVTVTGSGDNGTAILVSWQPPPEEEQNGLVQEYK
IWCLGNESRYHINRTVDGSTHSLLIPGLVAGVTYRVEVAAGTGAGPGVKSEATSFQLDSS
GRVLPPPLDDENTISQQISDVVRQPAFIAGIGAACWIILMVFSIWLYRHRKKRNGLSSSY
AGIRKVPSFTFTPTVAYQRGGEAVSSAGRPGLLNIGEPATQPWLADTWPNSCSNQNDCTI
NCCTGSNGNSDSNLATYSRPADCIANYSNQMDNKACNLLAPDTGLYSDVDLSNKINEMKT
FNSPNLKDGRFVGPGGQPTPYATTQLIQSSLANNNMNSSSCGSGGGSADLNEKQSWKSSQ
GTPQKQADINTPLQYNVMEQNKLNKDHYRGEGPISVTIPYNQAQDALTGGTYSSSDRGSS
TSGSQGQKKGGRTSKQAKQNTMNWTELLPPPPVNPPPCQEYTLAMDDSYDTDLQCPLPPS
RMYLQPDELEEEEEEVELERGPTPPVRGAASSPAAVSYSHQSTATLTPSPQEEMHPMLHD
NPDLHERRRLLVSPPPPPRPLSPPHTYGYISSPLGLDTDGLEEDEDEEEGDETDAEVARV
HQHHSHPHQQHLPQQRALLRGLEQTPASSTCDLESSVTGSMINGWGSASEEDNASSGRSS
AVSSSDGSFFTDADFAQAVAAAAEYAGLRVAKHPGKGPHQLPVSGAARKYQNLPAGHRPG
SPVSTDSNVSAAPGQRRPLKRQKQHPAAQTGYQRREAYTEDLPPPPIPPPAMLKSPTHPA
KTIPEGPRGAMSPRSNSADGKDKRTNPGGPRPRDGSDTRTSSSERREGQDIQRGQRTGKS
SKQDAGAAQKSRHHPGSEDILPYSRPSFPAIHSPRGERDPSSSSSLSSRGSGGRRRGEGA
PGARRNPVDVGLNTTGAFQIDGEELEMVES
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atgacggggagaattattggaatcgtgttttttatcgcagttttacacgtttgcacagga
tcccgtctgcgtcaggaagacttcgcaccccgcattgtggaacacccctccgatctgatc
gtatccaaaggtgaacccgccaccctaaactgcaaggctgatggaaagcccaacccgacc
gtggagtggtacaaggatggagagcgtgtggaaacggaccgggacaaccctcgatcccac
cgtatgctcctgccgagcggttccctattctttctgcgtatcgtacacgggcgtcgcagc
aaacccgacgaaggctcctacgtttgcgtggcccgtaactacctgggagaagcggttagc
cacaacgcctcactggaagtagctattcttcgagatgatttccgtcagaaccccgtggac
gtgatggtggcggcgggcgagccagcggtcatggagtgccagccgccccgtggacaccca
gaacccaccatctcctggaagaaagatggagtcaccatcgacgacagagatgagcggata
acgatacgaggaggaaaactgatgattaccaacacccgcaaaacggatgcagggaagtac
gtgtgcgtgggaaccaacatgatgggggaacgagagagtgagatcgcagagttgactgtt
cttgagaggcccagcttcttgcgaaagccgagcagtcagtctgttctggtggaccagagt
gttgagttcaggtgtgaagctcaaggagaccccgtgcccaccatccgctggaggaaagag
gacggagatctacccaagggacggcatgagatctgggaggaccacactctcaagctgaag
aggctgacttcaggagacgccggtacttacacctgtcaggcggagaacatgatgggaaag
acggaggccagcgccaccctcaccgtccacgttatgtctgttcctcctgtgtttgtggtg
cgacccaggaatcaagtagccgggatgggccgcaccgtgacctttcagtgcgaagccaca
ggaagtcctcaacctgctatattttggcagaaagaaggcagtcagaacctcctgttctcc
tctcaacctcctcctccgtccagtcgtttctctgtctctcagacgggcgatctgaccatc
acggcggtggagcgttcggacggaggctactacagctgtcaggctctgaacatcgccggc
agtgtgatcaccaaagccctgctggaggttacagacgtgatctcagacagacctccaccc
atcgtgcgccagggtcccaccaaccagaccgtggctgtggacgggacggtggtcctgggg
tgccaagccaccggcacgccgtctcccaccatcctgtggaggaaagacggggtcctggtg
tccacccatgattctcgactcaaacaactcgacacgggagccctgcagatccgttacgct
aagctgggagacactggcacgtacacctgcaccgcgtccacccccagcggagaggcatcg
tggaaggcttacctggaggtgcaagagttcggctctccggttcagcccggccgacccaca
gatccgaacctcatccccagcgccccttccaaaccggaggtcacagacgtcagccgcacc
tcagtgtctctgtcctggaagcccaacctgaacactggagccacgcccacctcttatgtg
atagaggccttcagccatgcggcgggcagcagctggcagacgctcgcggatcacgtgaag
accgagagcttcgtcctgaagaatctgaagcccagcgccgtctacctgttcctggtcaga
gccgccaatgcgtacggcctgagcgaccctagccccatcagcgacgcggtcaaaacacaa
gacgtcccaccaaccagtcagggagtggagcatggccagatccagagggaactaggagat
gttgtcattcacctccacaatcccacaattctctcatcgtcctccgtcagagtccagtgg
actgtggagcagcagtctcagtacatccagggctataaggtgatgtaccggccatccccg
gagggcgctcagcagcgtgtggagtggggcatgtttgaggttcgaaccctgggggaacac
agcgcagtcgtcacccagctcaagaagggcgtgacctatgagttcaaagttcgacctttc
ttcaacgagttccaaggcaccgacagcgacatcaaagtgggcaagaccctcgaggaagcg
cccagtgccgctccccggggggtcactgtaacaggaagcggagacaacggcacagcgatc
ctggtatcctggcaaccgcccccagaggaggagcagaacggcctggtgcaggagtataag
atctggtgtcttggtaacgaaagccgataccacatcaatcgcacagtggacggttctaca
cactcgcttctgattcccggcctggtcgcaggcgtcacgtacagggtagaggtggcagcc
ggcaccggggccggtcccggggtcaagagcgaggccacgtccttccagctggactcgtcg
ggtcgtgtccttccgccgccgctggacgatgagaacacgatttctcagcagatctcggac
gtggtccgccagccggccttcatcgcgggcatcggcgcagcctgctggatcatcctcatg
gtgttcagcatctggctctaccggcaccggaagaagaggaacggcctgagcagcagctac
gccggcatccgcaaagtgccctccttcaccttcacccccacagtggcctatcagagagga
ggagaggccgtcagcagtgcgggaaggccgggtttattgaatataggtgaaccggcaacc
cagccctggcttgcggacacctggcccaacagctgctccaatcaaaacgattgcaccatc
aactgctgcaccgggagcaatggaaacagcgacagcaacctggccacctacagccgccca
gctgactgcattgccaactacagcaaccaaatggacaacaaggcctgcaatctgctggct
ccagacacaggcctttacagcgacgtggacctctccaacaagatcaacgagatgaagacc
ttcaacagccccaacctgaaggatggccgtttcgtgggaccaggtggtcagcccacgccc
tatgccaccacccagctcatccagtccagcctggccaacaacaacatgaacagcagtagc
tgcggaagcggaggaggaagtgccgaccttaacgagaagcagagctggaagagcagccag
ggaacccctcagaaacaggccgacatcaacacacccctgcagtataacgtcatggaacaa
aacaaactgaacaaggaccactaccgaggtgagggtcccatctcagtcaccatcccctat
aaccaggcccaggacgccctcacaggaggaacctacagcagctcggacaggggaagcagc
acctctggaagtcaagggcagaaaaaaggtgggcgaacatctaaacaggccaaacagaac
actatgaattggaccgaactgttgccgcctcctccggttaatccaccaccatgtcaggaa
tacacactcgcgatggacgacagttatgacaccgacctgcagtgccctttgccaccatct
cggatgtatctgcagcctgacgagcttgaagaggaggaggaggaggtggagctggagcgc
ggacctacgcctcctgtgcggggagcggcttcctcccctgcggccgtgtcctacagtcac
cagtccaccgcgaccctcaccccgtcccctcaggaggagatgcatcccatgctgcacgac
aaccctgacctacatgagcgcaggcgactcttggtgagcccaccccctccaccgcgccct
ctctccccgccgcacacgtacggctacatctccagccccctcggcctggacacggatggc
ctggaggaagatgaggacgaggaagagggtgacgaaacggatgcagaagtggctcgagtc
caccagcaccacagccaccctcaccagcagcacttgccccagcagagggctctcctgcgg
ggcctggaacagaccccggcttccagcacctgcgaccttgagagctcggtcaccgggtct
atgatcaacggctggggctcggcttcagaggaggacaacgcctcgtcgggacgttccagc
gccgtcagctcgtcggacggatctttctttaccgatgctgatttcgctcaggccgtggca
gctgcggccgaatatgctggtctacgagtggcaaagcatcctgggaaaggcccccatcag
cttccagtgtctggagcagcacggaaataccaaaacctccctgcgggacaccgtccaggc
agcccagtgtccacagacagtaacgttagcgcagccccgggtcagaggaggcccctaaag
aggcaaaaacaacatccagctgctcagacaggctaccagcggcgagaggcctacacagag
gatcttccacctcctccgattcctcccccagccatgctgaagtctccaacacacccggcc
aaaactatcccggagggaccacggggggccatgtcacccagatccaattctgctgatggc
aaagacaagcgaacgaatccgggcggacccaggccccgggatggctcagacacccggacc
agctcttcagaacggcgtgagggccaagatatacagaggggtcaaagaacggggaaaagc
agcaaacaagatgccggtgcagcccagaagagccgccaccacccaggctccgaggacatc
ctaccttatagtcgcccatctttcccagccatccacagtcctcgtggagagagggacccc
agctcctccagttcactgtcctctcgggggtccggtggacggcggagaggcgagggggct
ccaggggcccgcagaaaccctgtagatgttgggctaaacaccacaggagccttccagata
gatggggaggagctcgagatggtggagagctga
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integrated database retrieval system
