Pimephales promelas (fathead minnow): 120472245
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Entry
120472245 CDS
T08155
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120472245 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
120472245 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120472245 (thoc5)
03041 Spliceosome [BR:
pprm03041
]
120472245 (thoc5)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120472245 (thoc5)
Spliceosome [BR:
pprm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120472245 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
120472245
NCBI-ProteinID:
XP_039518270
LinkDB
All DBs
Position
Unknown
AA seq
722 aa
AA seq
DB search
MSSDSVKKRKPKVIRSEAGTPEAKRGRGESDQLSAVSSQFRKVRLRQEKVKIPAGPHLIG
QRKLFTAKHQEVRVYNEEVELEGRDPQQDYMLYKDTCAALAKLMAEIQELKAGGVKDGSA
EIEQRRRQSSVHFITLKKLNRLAHMRLKKGRDQTHEAKQRVDVLHLQLQNLLYEVMHLQK
EIGKCLEFKSQHEEIELVSEEEFFQEAPAEISRPHVTRDDQHQLTLARLDWELEQRKRLA
EQYKTSLTSKEKIQKAIEQKREYLSSLQPGLQNIMQASVPVQEYLKMPFEHMQKQAEVAR
HLPPPLYVLLVQAGAYGQACDKHLSVSISGDVDEAKALSRPPEDSQDDESDSDAEEEQQN
TKRRRATVGAQLDDKRKEMLRRHPLSLCVDLKCKDGSVLHLFFYYLMNLNIVTVKSKAST
SMDLSGAVSAGELLNPESLLDCLYGSDHGKETPNPSNRYQFDKVGITTFSDYVSDLGHPY
VWVQKLGGLQFSSDGAQSGLRGSALSASHMERTIKLLRGRLQARLSLHKQFSSLEHSIIP
VSSECQHLFPAKVISGLTRWTMMSHQEFTELGFVQHVVKAGLVHETDLFFMAVVERGTAR
VSAAVVLNPRYPEVAPLFSLSLLWKGERSGRSDDNLRAIESEVNVFRSELQGPRPGLQLL
TNQIQRLCVCLDVYLETESQVCDGSEGPKEFPREKMCLRTARGPSRLKPFKYNHPQGFFS
HR
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagactctgtgaagaagaggaagccgaaggtcatccgaagcgaagcagggact
ccagaagccaagcgcgggcgaggagagagcgatcagctgagtgcagtcagttcacagttc
aggaaggtcaggttgaggcaggagaaggtcaagattcccgccggacctcatcttatcgga
cagaggaagctgtttacagcaaagcatcaggaggtccgtgtgtataatgaggaggtggag
ctggagggcagagacccgcagcaggactacatgctgtataaggacacgtgtgccgctctg
gccaaactcatggcggaaatccaggagctgaaagccggcggcgtgaaagacggaagtgcc
gagatcgagcagagacgcagacagagcagcgttcatttcattaccctgaagaaactcaac
cgcctggcacacatgcgactgaagaaaggccgagaccagacacatgaggcgaagcagcga
gtggacgtccttcacctgcagctgcagaatctgctctatgaggtcatgcacctgcagaaa
gagatcggaaaatgtcttgagttcaagtctcagcatgaggaaatcgagctggtgagtgag
gaggagttcttccaggaggctccggctgagatctcacgccctcacgtcacgcgcgacgat
cagcaccagctcacgctcgcacgcctggactgggaactagagcagaggaagaggttggcg
gagcagtataagacgtctctgaccagtaaggagaagattcagaaggccattgagcagaag
agagaatatctgagcagcctacaacctggactgcagaacatcatgcaggcgtctgtccca
gtgcaggagtatctgaagatgccgttcgagcacatgcagaagcaggccgaggtcgcccgt
cacctgccgccgcctctctatgtgctgttggtccaggccggggcgtacggacaggcctgc
gacaaacatctgtctgtgagcatcagtggagacgtggatgaggccaaagctctgtccaga
cccccggaggactcgcaagatgacgaaagtgattcggacgccgaggaggagcaacagaac
acgaagcgccggcgggcgactgtaggagctcaactggatgacaagcgtaaagagatgctg
agacgccaccctctctcgctctgcgtggacctcaagtgtaaagacggcagtgtcctgcat
ctgtttttctattatctcatgaatctcaacattgtgactgtgaagagcaaagcttccacc
tcgatggatctgtctggagccgtcagcgccggggagcttctgaacccggagagtttgctg
gactgtctttatgggtccgatcacggcaaggagacgcccaacccttccaaccgctaccag
tttgataaagtcggaatcactacgttttcggattatgtatcagatctcggacacccatac
gtttgggtgcagaaactgggcggcctgcagttctcgtccgatggtgcacagtcggggctg
agaggaagtgctctgagcgccagtcacatggagaggaccataaaactactgcgaggaaga
ctacaggctcgcctgtccttacacaaacagttcagctcgctggagcacagcatcatcccg
gtgtccagcgaatgccagcatctgtttcccgctaaagtgatttccggtctcacgcgctgg
accatgatgagccaccaggaattcaccgagctgggcttcgtacagcacgtggtgaaggcc
ggtctggtgcatgagacggatctgttcttcatggcagttgtggagagaggaacagcacgt
gtgtcggccgccgtggtgctgaacccccgttaccctgaggtggcgcccctcttctcgctc
tctctgctctggaagggagaacgcagcggccgctctgacgataacctgcgggcgatcgag
agtgaggtgaacgtgttccggtccgagttgcaggggccgcgtccgggcctccagctcctg
accaatcagatccagcgtctgtgtgtgtgtctggatgtgtatctggagacggagagtcaa
gtgtgtgacggctcagaggggccgaaagagtttcctcgagagaagatgtgcttgcgcact
gccaggggtccgagtcgcctgaagcccttcaagtacaatcatccgcagggtttcttcagt
caccgctga
DBGET
integrated database retrieval system
