Pimephales promelas (fathead minnow): 120472265
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Entry
120472265 CDS
T08155
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120472265 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120472265 (prpf8)
Spliceosome [BR:
pprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120472265 (prpf8)
Complex C
U5 SnRNP specific factors
120472265 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120472265
NCBI-ProteinID:
XP_039518320
LinkDB
All DBs
Position
Unknown
AA seq
2342 aa
AA seq
DB search
MAAAFPYRGVPGTMPPGVPPPPPAVAPIPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGF
VDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQI
RDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE
PPLDYADNILDVEPLEAIQMELDNEEDSSVVDWLYEHQPLKDTTKYVNGTTYRRWQFTLP
MMSTLYRLANQLLTDLVDGNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDW
NEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFD
PLINPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNL
RSGRTRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLF
RSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTK
ERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYR
YKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLG
NLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHL
SESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCK
KNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYK
HDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKE
VGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVY
KWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKN
NVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLS
FQDTATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKC
WPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMCGFE
CRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGS
TTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP
VVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQ
PWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYD
KGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGT
YFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQV
QLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKET
IHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDS
HDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKI
MKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKT
FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLP
VEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQ
MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTD
EEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQT
KEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVS
SDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGT
HQTVHLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTII
ITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMV
PGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGELYNADREDM
YA
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcgttcccctacagaggtgttcctggaacaatgcctccaggtgttcctcca
cctcctcctgctgttgctccaataccagattacatgactgaggagaaactgcaagagaaa
gctcggaaatggcagcagcttcaggccaaacgctactcggagaaaagaaagtttggcttt
gtggatgctcagaaagaggacatgccacctgagcatgtgcgaaaaatcatcagggatcat
ggtgatatgacgaacaggaaattccgtcacgacaagagggtctaccttggggcactgaaa
tatatgccccatgcagtactcaaactgctggagaacatgcccatgccctgggagcagatc
agagatgttcctgtgctctaccacattacaggcgccatttcctttgtaaacgaaatccca
tgggttattgagccggtgtacattgctcagtggggcacaatgtggatcatgatgcgtcgt
gagaagagagacagacgtcacttcaagcgcatgcgtttccctccatttgatgatgaagag
cctccattagattatgcagacaacatcctggatgttgagcctctggaggcaatccagatg
gagctggacaatgaggaggattcttctgttgtagactggttgtatgagcatcaacctcta
aaagataccacaaaatatgtgaatgggaccacatacagacgctggcagttcactttaccg
atgatgtccactctgtatcgattggctaatcagctgctgacagacttggtggatggaaac
tacttctacttgtttgacttgaaggctttcttcacctccaaagctttgaacatggccatt
ccaggggggcccaaatttgagccgcttgtcagagacattaacctccaggatgaagactgg
aatgagttcaatgacatcaacaagatcatcatcaggcagccaatcaggaccgaatacaaa
attgcattcccttacttgtacaataacctaccacatcacgtgcacctcacctggtaccac
acaccaaacgtggtgttcatcaagactgaggatcctgatctgcctgccttctactttgac
cctctgatcaaccccatctctcataggcactctgttaagagccaagagccattgccagat
gatgatgaggagtttgaacttcctgagtatgtagagccattcctgaaggagacgcccctc
tacactgacaacacagctaatggaattgcactgttgtgggcacctcgtccattcaatctc
cgctccggaagaaccagacgggctattgatgtgcctcttattaaaaactggtatcgtgag
cactgtcctgcaggccaacctgtgaaggtgcgtgtgtcttaccagaagctcctgaagtac
tacgtgctaaacgctctaaaacacagaccacctaaggcacagaaaaagagatacctgttc
cgttctttcaaggccaccaaattcttccagtctacaaagctggactgggtagaagtcggt
ctccaggtgtgccggcagggctacaacatgctgaacctgctcattcacagaaagaacctc
aactacttgcacttggactacaacttcaacttgaagcctgtgaaaaccctcacaacaaag
gaacgtaagaagtccagatttggaaacgcgttccacttgtgccgtgaggttctgcgtttg
agcaagcttgtggtagacagtcatgtgcagtacaggcttggaaacgttgacgcattccag
ttgtcagatggtctgcagtacatttttgcccatgtcggtcagttgactggcatgtaccgc
tacaagtacaagctcatgaggcagatcagaatgtgcaaagacctgaagcatctcatctac
taccgcttcaacacaggcccagttggaaaaggtcctggctgtgggttctgggctccaggg
tggagagtctggttgttctttatgagaggcatcacccctcttctggagcggtggcttggc
aatcttctggccaggcagtttgagggtcgacactctaagggtgtagccaagactgtgacc
aaacagcgtgtggaatctcactttgatcttgagctgagagctgctgtgatgcatgacatc
ctggatatgatgcctgagggtatcaagcagaataaggctagaaccatcttgcagcatctc
agcgagtcatggaggtgctggaaggccaacatcccttggaaggttcctggacttccaacc
cccatcgagaacatgattctccgctacgtgaaggccaaagctgactggtggaccaacacg
gcccactacaaccgtgagagaatcagaagaggagctactgtggataagactgtgtgcaag
aagaacctgggacgtctcactcgactctacctaaaggcagagcaagagagacagcacaat
tacctgaaggatgggccttacatcactgctgaagaggccgtggccatctacaccaccaca
gtgcactggctggagagccgtcggttctctccgatccccttccctcctctctcctataaa
catgacactaagcttctcatcctggctttggagagactcaaggaagcttacagtgtgaag
tcaaggctgaaccagtcacagcgtgaagagttgggtctgattgagcaggcctatgacaac
cctcatgaggctctgtccagaatcaaacgtcacctcctcactcagagagccttcaaagag
gtgggcattgagttcatggacctttacagtcatctggtgccggtttacgatgttgaacct
ctggaaaagatcactgacgcgtacctggatcagtacctttggtatgaagcagacaagcgc
aggcttttccctccctggatcaagccagccgacaccgagccacctccactgctagtgtac
aaatggtgccaaggaatcaacaacctgcaggatgtgtgggagacagcagagggtgaatgc
aacgtcatgctggagtctcgctacgagaagatgtacgagaagattgacttgacattgttg
aacaggcttctgcgtctcattgtggatcacaacattgccgattacatgacggctaaaaac
aatgttgtcattaactataaggacatgaaccacacaaactcgtatggtattatccgtggc
ctgcagtttgcctctttcatcgtgcagtactatgggttggtgatggacctgctggtgctg
ggtctgcacagagcaagtgagatggctgggcctcctcagatgcccaatgacttcctcagc
ttccaggacacagcaactgagagtgcccatcccatccgtctttactgcagatacatagac
cgcattcacatcttcttcaggttctctgctgatgaggcgagagatctgatccagagatac
ctgaccgagcacccggatcccaacaatgagaacattgtgggctacaacaataagaaatgc
tggccgcgtgatgctaggatgagactgatgaaacatgatgtgaacttgggccgtgctgtg
ttctgggacatcaagaatcgcctccctcgttctgtgaccacaattcagtgggagaacagc
tttgtgtcagtgtacagcaaggacaaccccaacctgcttttcaatatgtgtggctttgag
tgtcggatcctcccgaagtgccgcactagttatgaggagtttacgcacaaagatggtgtt
tggaatttgcagaatgaggtgacaaaggaaaggacagcacagtgcttcctgcgtgtagat
gatgagtccatgcagaggttccacaaccgagtgcgacaaattcttatggcttctggctca
accaccttcactaagattgtgaataagtggaacacagctctgattggtctgatgacgtac
ttccgtgaagctgtggtcaacactcaagagcttctggacctgctggtgaagtgtgagaat
aagatccaaacccgtatcaagattggtttgaactccaaaatgcctagccgtttccctcct
gtggtgttttacacccctaaggagttgggtggactgggaatgctttccatgggacacgta
ctaatcccacagtctgaccttcggtggtccaaacagactgatgtgggaatcactcatttc
cgctctggaatgagtcacgaggaggatcagttgattcctaatctgtaccgttacatccag
ccatgggagagtgagttcattgactctcagagagtttgggccgaatacgccctcaagcgt
caggaagccattgctcaaaacagacgtttgacactggaagatctggaggactcctgggac
aggggtattccacgtatcaacaccctcttccagaaggacagacacacactggcttatgac
aagggctggagagtcagaacagacttcaaacagtaccaggttctgaagcaaaatccattc
tggtggactcaccaaaggcatgatggaaaattgtggaatttgaacaactaccgtacggac
atgatccaggcacttggaggggtggagggcattcttgagcacactctgttcaagggaacc
tacttccccacctgggagggtctcttctgggagaaggctagtggtttcgaagagtccatg
aaatggaagaaactcaccaatgctcagagatctggtctgaaccagattcccaaccgacga
ttcaccttgtggtggtctcctacaattaacagagccaatgtatatgtgggtttccaggtg
cagttggacctcactggaatcttcatgcatggtaaaatcccgactctcaagatctctctg
atccagatcttcagagctcacttgtggcagaagattcatgagagcgtcgtcatggatctc
tgtcaggtgtttgaccaagagctggatgctttggagatcgagactgtccagaaagagaca
atccatcccaggaagtcttacaagatgaattcctcctgtgctgacattctgttgtttgca
tcctacaagtggaatgtctcacgtccctcgcttctagcagactccaaggatgttatggac
agcaccaccacacagaagtactggattgacattcagctcagatggggtgattacgactcc
catgacattgagcgatatgccagggccaagttcttggactacaccactgacaacatgagt
atttacccatcacccactggagtgctgattgccattgatctggcttacaaccttcacagt
gcttatggaaactggttccctggagccaagcccctgatccagcaggccatggcgaagata
atgaaggccaaccctgctctgtatgtgctgagagagcgaatccgcaagggtctccaactt
tactcttcagagcccactgagccttacctatcttcccagaactatggagagctcttctct
aaccagatcatctggtttgtggatgacaccaatgtgtacagagtcaccatccacaagaca
tttgaaggtaacttgaccaccaaaccaatcaatggggcaattttcatcttcaaccccaga
actggacagcttttcctgaagatcattcacacctctgtatgggcaggacaaaagcgtctc
ggacagctggctaagtggaaaactgctgaagaagtggctgccctgatccgatcgctgcct
gttgaagagcagcccaaacagattattgtgaccaggaagggcatgttggatcctcttgag
gtgcacttgctggacttccccaacattgtaatcaagggctctgaactccagctgccattc
caggcatgtctgaaagtggagaagtttggagacctcattctgaaggccacagagcctcag
atggtcctgttcaatctgtacgatgactggctgaagaccatctcctcttacactgctttc
tctcgtttgatcttaatcctgagagcacttcatgtcaacaatgaccgtgctaaagttatc
ctgaagcctgacaagaccaccatcacagagccccaccacatctggcccactctgactgat
gaggagtggatcaaagttgaggtgcagctcaaagatctcatcctggctgactatggcaag
aagaacaatgtgaatgtggcatctttgacccagtctgaaatcagggacatcatcctgggt
atggagatctcggctccatcccagcagagacaacagattgctgagatcgagaagcagacc
aaggagcagtctcaactgacagccacacagactcgcactgtaaacaaacacggagatgag
attatcacctccaccaccagcaactacgagacgcagaccttctcttccaaaactgaatgg
agagttagggcgatctctgctgccaacttgcacttacgtactaaccacatctacgtatca
tcggatgacatcaaagagactgggtacacttacatcctgcccaagaacgttctgaagaag
ttcatctgcatctcagatttgcgtgctcagattgcaggttatctctatggaaccagccct
ccagataaccctcaggtaaaagagatccgttgcattgtgatggtgccacagtggggtacg
catcagacggttcacctgcccaaccagctgccacaacacgagtacttgaaggaaatggaa
cctcttggatggatccatacacagcccaatgaatcgccccagctttcccctcaggatgtc
accactcacgcaaaggtcatggctgacaacccatcctgggatggcgagaagactatcatt
attacttgcagttttacccctggttcctgcacgctgacggcatacaagctgactcctagt
gggtatgagtggggtaggcaaaacacagataagggtaataaccccaaaggttacttgcct
tctcactacgaaagagtacagatgctcttatctgaccgtttccttggcttcttcatggtg
cctggccaggtttcctggaactacaacttcatgggtgttcgccatgaccctaacatgaag
tatgacctacagttggccaacccaaaagagttctaccatgaagttcacagaccatctcac
ttcctcaacttcgcttctttgcaggaaggtgaactctacaatgctgatcgtgaggacatg
tatgcataa
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integrated database retrieval system
