Pimephales promelas (fathead minnow): 120472274
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Entry
120472274 CDS
T08155
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120472274 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120472274 (usp39)
Spliceosome [BR:
pprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
120472274 (usp39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
120472274
NCBI-ProteinID:
XP_039518336
LinkDB
All DBs
Position
Unknown
AA seq
497 aa
AA seq
DB search
MIAGVKRERDVDEDEDEEVRVKIGRGHVEDRRSRHCPYLDTINRSVLDFDFEKLCSISLS
HINVYACLICGKYFQGRGQKSHAYIHSVQFTHHVFLNLHTLKFYCLPDNYEIIDSSLEDI
TYVLKPTFTKPHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQALSNVPPL
RNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK
NFQITKQGDAVDFLSWFLNALHGALGGTKKKSSILAKVFQGSMRIFSKKLPHPDLPPEEK
EALLLKEEYQEKMSESTFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGNTEKEY
KTYKENFLKKFQLTKLPPYLIFCIKRFTKNNFFIEKNPTIVNFPITNVDLREYLTEEAQA
TEKFTTYDLVANVVHDGKPTEGSYRIHVLHHGTGKWYELQDLQVIDILPQMITLSEAYIQ
IWKRQDKEDGAGSHKGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcaggcgtgaaacgggagagggacgttgatgaagacgaagatgaagaggtgcgt
gtgaaaatcggtcgtggtcatgttgaagatcgcagaagtcgccattgtccatatctggac
acaatcaataggagtgttttggatttcgacttcgagaagctttgctcaatctctctttca
cacattaacgtctatgcctgtttaatctgtgggaaatatttccaaggtcgaggtcagaag
tctcatgcgtacatccacagcgttcagttcacacatcacgttttcctgaatctccacacg
ttaaagttctactgcctgccagacaattatgagatcattgactcctcattagaggacatt
acatatgtgctgaaacccacgttcaccaaaccgcacatctctggtttggataagcaggga
aagctgtacagagcctacgatggcactacttatttgccaggaattgtgggtctcaataat
atcaaggccaatgactatgctaatgtggtattgcaggcgctgtcaaatgtgccccctctg
cgaaactacttcctcgaggaggaaaactaccgtggaattcgccggccgccgggcgacatc
atgtttcttttggtgcagcgttttggggagctcatgcgcaagctgtggaacccgcgtaac
tttaaagcccacgtttcgccgcatgaaatgttgcaggctgtggtgttatgcagtaaaaag
aactttcagatcactaagcaaggggacgctgttgactttctctcatggttcctgaatgca
ttgcatggtgctcttggtgggacaaagaagaaatcatccatactcgccaaggtgtttcag
gggtccatgcgaatcttctcaaagaaacttccccatccagacttgcctcctgaagagaaa
gaagcccttctccttaaggaggagtaccaggagaagatgtcggagtccaccttcctctac
ctgacccttgacctgcccaccgcaccgctctacaaagatgagaaggagcagctcatcatt
cctcaggttcctctcttcaacatcctgggcaagttcaatggaaatactgagaaggagtac
aagacctacaaagagaactttctgaaaaagttccagctcaccaaacttcctccatacctc
atcttctgcatcaaacgattcacaaagaacaacttctttattgagaagaacccaaccatc
gtcaacttccccatcacgaacgttgatttgcgcgagtacctcactgaagaggcgcaggct
accgagaagttcacgacctatgacctggtggccaatgtggttcatgatgggaaacccact
gagggttcctataggattcatgttctgcatcacggcacggggaagtggtacgagcttcag
gacctgcaggtgattgacatccttccacagatgatcacactctctgaggcgtacatacag
atttggaaaagacaagataaagaggatggagcaggaagccataaaggggcttag
DBGET
integrated database retrieval system
