Pimephales promelas (fathead minnow): 120472296
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Entry
120472296 CDS
T08155
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03022
Basal transcription factors
pprm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120472296 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
120472296 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120472296 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120472296 (gtf2h1)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120472296 (gtf2h1)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120472296 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
120472296
NCBI-ProteinID:
XP_039518369
LinkDB
All DBs
Position
Unknown
AA seq
550 aa
AA seq
DB search
MASLSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFSVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESSTFHFANESTALKDRDAIKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRMSLNSVEHSLANNKQQEVGISAAFLADIRPQTDG
CNGLRYNLTSDIIESIFRTYPTVKQKYAENVPHNMTEKEFWTRFFQSHYFHRDRISTGQQ
DIFSECAKQDEKGQKSMVNQGVKNPMVDLLSLEDKTLDEGYGTAKVPTSSNTSNKSLREN
SNSAIIKRFNHHSAMVLAAGLRRADAPSDQASETSSTDGNSRDSDFFQPPLKKVKLQEAI
EYDDLQGESVRKTIALNLKKSDRYSHGPTPLQSQHYTTSQDIINSVSIIQQEMRNYKPRL
TQVMSSSAASSAITALSPGGVLMLGGGQQTINQLVPTDVQGELKHLYTAAGELLRHFWSC
FPVSTPFLEEKVVKMKSNLERFQLTKLRPFQEKIQRQYLSTNLTGHLEEMLQAAYNKFQA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctgtccgaggaggtgttgttggtggtgaagagggtccgtcagagaaagcag
gacgggactctgtacctgatggccgagcggatcgcctggggtccagaagggaaggaccgc
ttttcggtcagccacctttatgccgacatccgctgtcaaaagatcagtcctgatggaaag
gcgaagatccagctccagctggttctgcacactggagaaagcagcacctttcatttcgcc
aatgagagcaccgcactgaaggacagagacgccatcaaagaactgctacagcagctcctg
cccaagttcaagaagaaagccaataaagagctggaggagaagaacaggatgttgcaggaa
gaccctgttctgttccagctctataaggacttagtggtgagtcaggtgatcagcgctgag
gagttctgggccaatcggatgagcctgaattctgtggagcactccctcgccaacaacaaa
caacaggaagtgggcatctctgctgccttcctggctgacatcagaccacagacagacgga
tgcaacggcctgcggtacaatctgacctctgacatcatcgagtccatcttcaggacttac
cctacagtcaagcagaaatacgctgagaacgttcctcacaacatgacggagaaggagttc
tggacgcgcttctttcagtcccattacttccacagggaccggatcagcacgggccagcag
gacatcttctccgagtgtgccaaacaggacgagaagggtcagaaatctatggtgaaccaa
ggagtgaagaacccaatggtggatcttctctcactcgaggataagacattagatgagggt
tacggcacagctaaagttcccacttcatcaaacacctcaaacaaatcactgagagaaaac
agcaactccgccataatcaaacgctttaaccaccacagtgccatggtgctggcagccggc
cttcgcagagcggatgctcccagtgatcaagccagtgagaccagcagcactgatgggaac
tccagagattcagatttctttcagccgccactcaaaaaggtgaaattacaggaagccata
gaatatgatgaccttcagggtgagagtgtgcgtaagaccatcgctctgaacctgaagaaa
tcagacagatattcccacggcccgactccgctgcagtcgcagcattacaccaccagtcag
gacattatcaactccgtcagcattatccagcaggagatgaggaactataaaccccgcctg
acgcaggtgatgtccagcagtgcagcgagctccgccatcacggcgctgtcacctggagga
gttctgatgctgggcggaggccaacagaccattaaccaattagtgcccactgatgttcag
ggcgagctgaagcacttgtacacggccgctggagagctgctccgacacttctggtcctgt
tttcccgtcagcactcctttcctggaggagaaggtggtgaagatgaaatctaacctggag
agattccaattgacgaagctccgcccctttcaagagaagatccaacggcagtatttgagc
actaacctaacgggccacctggaggaaatgcttcaggctgcgtacaacaagttccaagcc
tggcaaacgcgccgaatgatgagaaaaacctga
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