Pimephales promelas (fathead minnow): 120472320
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Entry
120472320 CDS
T08155
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120472320 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120472320 (scarf1)
Membrane trafficking [BR:
pprm04131
]
Endocytosis
Phagocytosis
Scavenger receptors
120472320 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
120472320
NCBI-ProteinID:
XP_039518401
LinkDB
All DBs
Position
Unknown
AA seq
894 aa
AA seq
DB search
MDTFLTSFGLMLMCVQCSAQRLSPTGKNICRSIRDSSPTCCPGWGQNGDECTVPLCEGER
ACLQDEVCVYPGLCRCKPGFYGYQCKARCPHEFWGADCRELCPCHPHGLCDPVTGECSCL
SNRWGNLCQNSCKCSRHGKCDPVYGNCHCEEGWWTSTCSKACQCNAATSTCDQATGRCLC
NEGYWGQKCSLQCNCFVSPCLQRTGACQCIRGWWGPSCDRRCNCNLSHSDCDLQTGTCLC
YPGYKGSVCNEPCESGKYGRGCKESCGHCEGGRSCSKQDGLCDACAPGWNGTRCDQSCPA
GYYGHRCQEVCAHCRNMDPCDPETGACLHCDTGWTGPRCDKPCTNGTYGDGCHFLCKTCY
HGHCDHVTGSCICLPGFQGESCNSSCPLNLYGVNCSSTCDCGNHACHPATGACPNSSRAG
LIAGLLIPLCILILALLFCCCCCGRPVEGKEGVAVEDVSLTVRMKHHVYTVLANMGAAMP
CITLWSSGLPRVTVSHHDPELTFNHSFIEQPSSGWVTDSFETDDEGEAIYCEPPREDVLT
VAGGELQELNSKCNFFPDPSTFSSEDMSQDFGIPRTSSIAKSKRPSVSFAEGTKFTSKER
RSSTQDLPGTTRKPKAWGVLMISALQGGQGNHSEIETEKEEKNNEESISSEEQAAASETS
QSDSARYGSGPLRTHLTVPGGRRRTLSNTRKNTQPSDGSHSDADSEKLTTVYVTVGKTQK
MAKQEPPSEGPVQAMLRRLGSLQRQKEEAALPKGRGQAIAKPPRKKLGARASAWEQTSGS
GQSEVVMRKPSRRQHSSLSSPCTVGATDFPQENSTPKRPLSSVLKSVPESETLHSLEVEQ
DTEVDCETDALTEHAYETVAPSDGVTSSEIIINETVMDQSENEPCYENVYVNHS
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggacacctttctgacctcatttggactgatgctcatgtgtgtccaatgctcagctcag
agactctctccaaccgggaagaatatctgccgcagtatcagggattcttctcccacatgt
tgtcctggatggggccaaaatggtgatgaatgcactgtccctctctgtgagggggaaaga
gcctgtctgcaggacgaagtgtgtgtttaccctggactttgtcgatgtaaacctggattt
tacgggtaccagtgtaaagcccgttgtcctcatgaattttggggggcggattgtcgtgag
ctttgcccctgtcaccctcatgggctctgtgacccagttacgggtgagtgctcgtgcctg
tctaaccgctggggcaacctgtgccaaaacagctgcaaatgttcacgtcatgggaaatgt
gaccctgtctacggcaactgccactgtgaggagggctggtggacgtccacttgctccaaa
gcctgtcagtgcaacgccgcaacatccacctgtgaccaagccacgggccgctgcttgtgt
aatgagggctactggggccaaaagtgcagcctgcaatgcaactgttttgtgtccccctgc
ctgcagcgcacaggggcctgtcagtgcattcgtggctggtggggtccgtcctgtgaccgc
cgttgtaattgtaatctcagccattccgactgtgacctgcaaactggcacctgtttgtgc
tacccgggttacaaaggctctgtctgcaatgaaccttgtgagagtggaaagtacggccga
ggctgtaaggagagctgtggacactgtgaaggaggcaggtcttgctctaaacaggacggc
ctgtgtgatgcctgtgcaccagggtggaatggcactcgctgtgaccagagctgtcctgca
ggttattatggccatcgctgccaagaggtttgtgcgcattgcagaaatatggacccatgt
gacccggaaactggagcatgcttacactgtgatactgggtggactggaccaagatgtgac
aaaccctgcacaaatggtacttacggagatggctgccacttcctgtgtaaaacctgctat
catggccactgtgaccatgtgacaggaagttgcatttgtcttcctggtttccagggtgag
agctgtaacagctcatgtcctcttaacctgtatggcgtcaactgctcctcaacatgtgac
tgtgggaatcatgcctgccatccagccacaggagcttgcccaaatagtagcagagcaggt
ctcatagcagggcttttgattcctctgtgcattttaatactcgccttgttgttttgctgc
tgctgttgcggcaggcctgtcgaagggaaggaaggagtggcggttgaggatgtgagcctt
actgtccgcatgaagcaccatgtttacactgtgttggccaacatgggtgcagctatgcca
tgcattactctttggtcatctggtttacccagggttacagtctctcatcatgatcccgag
ctcacatttaaccacagcttcattgagcagccatcatccggctgggtgactgattcattt
gaaactgatgatgaaggagaggccatttactgtgaaccgcccagggaagatgttcttaca
gtggccggtggagagctacaggagctgaactccaagtgtaacttcttccctgacccatca
accttcagcagcgaggacatgtcacaagattttggtatccctcgtacctccagcatagcc
aaatccaaacgcccttcagtgtcttttgcagagggcacaaagttcacctctaaagagcgc
cgtagctcaacccaagatctgccaggaactactcggaaacccaaagcctggggcgtgctg
atgatctctgctctgcaaggaggacagggaaaccatagtgagatagaaacagaaaaggaa
gaaaaaaacaatgaggagagcatctcctctgaggaacaagcagctgcctctgaaacatca
caatctgactcggcaagatatggttctggcccgctcaggactcacctcactgtgcccggt
gggagacgacgcacactttccaataccaggaagaacacccagccatctgatggcagccat
tcagatgcagattcagagaagttaacaactgtttatgtgactgtaggcaagacccaaaag
atggctaagcaagagccaccttcagaagggcccgttcaggcgatgctgcgcagactaggc
agcctgcagagacaaaaagaggaggctgccctgcccaaaggcagggggcaggcgattgcc
aagcccccgcggaagaaactgggagcacgggccagtgcgtgggagcaaacttctgggtcc
ggccaatcagaggtggtcatgaggaagcctagtcgcaggcaacacagctccctcagctct
ccctgcacagtaggggcaacagactttcctcaggagaacagcaccccgaagaggcccttg
tcctctgttttaaaaagtgtcccagagagcgaaaccctccatagtttagaggtggagcaa
gacactgaagtagattgtgagacagacgctctgacagagcacgcttatgagactgtggct
ccgtctgatggggtcacctcttcagagattattattaatgaaaccgttatggaccaatca
gaaaatgagccatgttatgagaatgtttatgtaaatcattcataa
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