Pimephales promelas (fathead minnow): 120473863
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Entry
120473863 CDS
T08155
Symbol
tsen34
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen34
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120473863 (tsen34)
Enzymes [BR:
pprm01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
120473863 (tsen34)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
120473863 (tsen34)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_int_endo
TSEN34_N
Motif
Other DBs
NCBI-GeneID:
120473863
NCBI-ProteinID:
XP_039519847
LinkDB
All DBs
Position
Unknown
AA seq
319 aa
AA seq
DB search
MDGDPAEMNMPQSSSSIEVKDYMDTRSESENQPAGDALVDIHFCGSTPLLWKVSDMKRCR
SLGVTGALVGSLARQPRQNVRLGRPLELLQEEALLLEETSTGVASLHTQDCGDEEKHSAA
VRQYEAGLESSYKEQCALALEDKKTVLKKIINEKENATDDSGKAIRDRLNALDQAFRFPW
PAMAVQLCTARAGFSHCPEERSFLSTDWPVPRDERLNTRFCVYRDLRNKGFYLTSAGKFG
GDFLVYPGDPLRFHAHFIALCISMDEELPLSDILAIARLGSNVKKTVLLCSPLGRSDTGK
DESVEGDVVYSSLQWSSMV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggatggggatccagcagagatgaatatgccacaatcatcatcaagtattgaagtaaag
gattatatggataccagaagtgaaagtgagaatcagccagcaggagatgctttggtggac
atccacttttgcggatccactcctctgttgtggaaggtctcggacatgaaacggtgcagg
tctttgggtgtgaccggggctctggtgggctctctggcccgtcagcctcgccaaaacgtg
cggctgggacgacccctggagctcctgcaggaggaggcattgctgctggaggagacgagc
actggtgtcgcttcactacacactcaggattgtggagatgaagagaaacattcagcggct
gtgaggcagtatgaggcaggtctggagagcagttataaggaacagtgtgctctggccctg
gaggacaagaagacagtactgaagaaaatcatcaatgagaaagagaatgccacagatgac
tctggaaaagcaattagagaccgccttaatgcattggaccaggctttccgctttccgtgg
ccggccatggcggtccagttgtgtactgcccgtgccggcttcagccactgtccagaggaa
cgcagtttcctttccactgattggccagtgcctagagatgaacgcttgaacactagattc
tgtgtatacagggatctgagaaataaaggcttttacctgacctctgcagggaagtttgga
ggagatttcctggtatatccaggagatcctctgcgcttccatgctcatttcattgcatta
tgcatttccatggatgaagagctacctctcagtgatattctagctatagctcgtctgggc
tctaatgtgaagaaaacagtgttgctttgctctccgctgggccgtagtgacactgggaag
gatgagagtgtggagggtgatgtggtgtattcatcgctgcagtggagttctatggtgtaa
DBGET
integrated database retrieval system
