Pimephales promelas (fathead minnow): 120473943
Help
Entry
120473943 CDS
T08155
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM39-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120473943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120473943
Enzymes [BR:
pprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120473943
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120473943
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_3
zf-B_box
zf-C3HC4_2
zf-RING_5
zf-RING_2
RING_XB3-XBAT31
ANCHR-like_BBOX
DUF4667
U-box
TRPM_tetra
zf-UBR
Motif
Other DBs
NCBI-GeneID:
120473943
NCBI-ProteinID:
XP_039519950
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MSLSKPEERLALELSCPICLQLYRDPVTLPCGHNYCLGCIQNAAHAEDPNSPKRCPECRE
EYGSPETLPKNFKLNGIVDGFLAATSGGGLRGGTTVPCDHCLDDPVAAVKFCTRCEMSLC
PSHLKKHEERHRSLHVLVGLPAERDGKRCPVHLKVTEYLCVQERLFLCSECLMEGTHQHH
EVQTFEVAKGEMTRILEKLGKSVSDKLQMTDALVKSANAGPRDKAEDKLVARANILLDNM
TSLITTYKSRMSTEMDDELHKRDKSWQASLCDLESCLHQLQEAQQCTSEVLNQSSEFLFI
QNYLTVEARVRQAANVTIPGLPSQESSDAKHLRALLRTDAFHVEMSLLLECLHGIMNPLD
LTFNPATANASLLLSTDLKTVKQCAGVKSSNAGDNSERFSSASQVLCSQGFSTGVHMWAV
EVGPGCAWSVGLCYKSMPRKGDHSRLGHNTSSWRLQWKSKKLTACHDSANVAVGDGLIVP
PKKVEATLDYEGGTIAFHSSGQGGRKQHLHTFSAVFKDAVYPAFGIHSTSEDSWITLLSG
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtctctaagtaaacccgaggagcgtcttgctttggagttgagctgtccgatctgtttg
cagctgtaccgtgatcccgtaacccttccttgtggacacaattactgcctgggttgcata
caaaatgctgcgcacgcagaagatcccaattccccgaaacgttgtccggagtgcagggaa
gagtacggcagcccggagactcttcccaagaacttcaagctcaacggtatcgtggatggg
ttcctggcggccacttcgggcggcggactgagagggggcacgacggtgccatgcgaccat
tgcctggatgatccagtggctgcggtgaaattctgcacacgatgtgaaatgtcattgtgc
cccagccacctcaagaaacacgaggaacggcacagatcactgcacgtcttagtgggactg
ccagcagaacgggatgggaagaggtgcccggtgcacttgaaggtcacggagtacctttgc
gtgcaggagcgcctgttcctctgctccgagtgcttgatggagggcacgcaccagcaccac
gaggtgcagacgttcgaggtggcgaagggggaaatgacgagaattcttgagaaactgggg
aagtctgtgtctgacaagctacagatgacagacgctctggtgaaaagcgccaacgcagga
cctcgggacaaggccgaagataagctggtggccagggcaaacatcctgctggacaacatg
acttcactcatcactacatacaagagtcgtatgagcaccgagatggacgacgagcttcat
aagcgagacaaaagctggcaggccagtctatgcgatttggagagttgtctacaccagctg
caggaagcccagcagtgcaccagcgaggttctcaatcaatcctcagagtttctcttcatc
cagaactacctcaccgttgaagcaagggtccgccaggctgctaacgtcaccattcccggt
ctaccttcccaagagtcctccgatgccaagcacctgcgcgctctcctacgtacagacgcc
ttccacgtcgagatgagtcttctgttggagtgcctccatggcataatgaaccctctagac
ctgaccttcaacccagccacggccaacgccagccttctgctgtccaccgatctcaaaaca
gtcaagcagtgtgcaggagttaagagcagtaatgctggagataacagcgagcgcttctcc
tcggccagtcaggtcttgtgctcgcagggtttctccaccggagttcacatgtgggcggtg
gaggtcggccctgggtgtgcgtggtctgtgggactgtgttataaaagcatgccacgtaaa
ggtgaccacagcaggctggggcataacaccagctcttggaggttgcagtggaagagcaag
aagctgacggcgtgccatgactcggctaatgtggccgtgggtgacgggctgatcgtgccg
ccaaagaaggtcgaagcgaccctggattacgaaggaggaactattgcattccacagctca
ggtcagggaggccgaaagcagcatcttcatacattcagtgccgtgtttaaggatgcagtg
taccctgcgtttgggatccactctacctcagaagattcgtggataactcttttgagtgga
gtttaa
DBGET
integrated database retrieval system
