Pimephales promelas (fathead minnow): 120474288
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Entry
120474288 CDS
T08155
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120474288 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120474288 (smarcd1)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120474288 (smarcd1)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120474288 (smarcd1)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120474288 (smarcd1)
PBAF complex
120474288 (smarcd1)
GBAF(ncBAF) complex
120474288 (smarcd1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIFT
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
120474288
NCBI-ProteinID:
XP_039520378
LinkDB
All DBs
Position
Unknown
AA seq
510 aa
AA seq
DB search
MAARSGFQPATPGGGGAPLGPGPPVAGAGPGMGPGTPSGRMGPGGPQNHMYRSPMPGYPR
PGMPPASRMTPQGPSMGPPGYGASPVSRPGMPVMDPSRKRPAPNQIQQVQQQNRNQHAKK
KKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIF
ISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVIELD
KDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRLARLL
GIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLHALL
MPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDNKIH
ETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQP
WAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtagtggttttcagcctgcgacacccggaggcggcggagccccattagga
cccgggccgccagtagccggtgcggggcccggtatgggtcccggtacgccctcaggacgg
atgggacccggcggcccgcagaaccatatgtatcgatcaccgatgcccggatacccgaga
ccaggaatgcctccagccagccgtatgactcctcagggaccctccatggggcctccaggt
tacggggccagtcctgtgtcccgccccggcatgccagtcatggacccgtcccgcaagcga
ccggcgccaaatcagatccagcaggtccagcaacagaatcgcaaccaacatgccaagaag
aagaaaatggctgataaaatcctacctcaaagaatcagagaacttgttcccgagtctcag
gcgtacatggacctgctggcgtttgagaggaagctcgaccagaccatcatgcgcaagcga
ctcgatattcaagaagctctcaagagacccatcaagcaaaaaagaaaactacggatattt
atctccaacacattcaatcctgccaaaccagatgcagaggacggcgagggtaccgttgca
tcttgggagctgcgtgtggagggacgacttcttgaagacactgctgtgtccaaatatgaa
gccaccaagcagaagaggaagttttcttcttttttcaagtctttagtgatcgagttggat
aaagacttgtatggacctgacaatcatttggtggagtggcaccgaacagccacgactcag
gagaccgacggatttcaggtgaaaaggcccggagatgttggggtccgctgcactgtactt
ctcatgctggactaccagccccctcagtttaagttggaccccaggctggcccggttgctg
gggatccacacccagacccgacccgtgatcattcaggctctgtggcagtacgtgaagacc
cacaaacttcaggaccctcatgaacgagagttcatcaactgtgacaaatacctccagcag
atctttgaaacccagaggatgaagttctctgagatccctcagaggctgcatgcactactg
atgccccccgagccaatcatcatcaaccacgtcataagcgtggatcccaacgaccagaag
aagacggcgtgctacgatatagacgtggaggtggacgacaccctgaagacccagatgaat
tcgttcctgctgtccactgccagtcagcaggagatcgcaggcctcgacaacaagatccat
gagaccatcgaaactattaaccagctgaagactcaaagggagttcatgttgagcttcgca
cgagacccgcagggcttcatcaatgactggctccagtcgcagtgcagagacttgaagacg
atgacggatgtggtaggaaacccggaggaggagaggagagccgagttttacttccagcct
tgggctcaggaggccgtgtgccgttatttctattcaaaggttcagcagaggagacaggag
ctggaacaggctcttggcattcgaaacacataa
DBGET
integrated database retrieval system
