Pimephales promelas (fathead minnow): 120474415
Help
Entry
120474415 CDS
T08155
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120474415 (upf3b)
03015 mRNA surveillance pathway
120474415 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120474415 (upf3b)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120474415 (upf3b)
mRNA cycle factors
P-body specific factors
120474415 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
120474415
NCBI-ProteinID:
XP_039520591
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MKEDKENTRPRERKVDINCDENDKPEKPNKEKKEAMTKIVIRRLPPSLTKEELEEQLQPL
PELDYLEFFSSDTSLFPHLFARAYLNFKNQDDVLLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKVAKKRSKKKDAKSGTIEDDADYKKFLEFYNGDEEKFPSNPETLLEEIEARTKELSG
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKFKKGE
KASDKDKEQPKDEQPKIKLLRKPEKADNGDTEKLKDKPKKQDREKQKEDRPEMKKRQNGE
HREEKGGRSEDSGHKDYRDRDGDRERDRDRDRERRQKEKERIRRQDEERRRRRERQDGEN
TYKKREEEGKKDKERVWEKRRHENTGESSVNAHPEKPSKDNKKEESAKKDRLRNKDRPAI
QLYQPGSRTRTRGGGRDGDGQAELESKNSQEKVAE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggaaaatacgcgtccccgagaaaggaaagtggatataaattgtgat
gaaaacgataaaccagagaagccaaataaagagaagaaggaagctatgacaaagattgtg
atccgacgtctgcctccaagtctaactaaagaagaattagaggaacaactgcagcctctt
ccagagctagattacctggagtttttctcaagtgacactagtcttttccctcatctgttt
gcaagagcatatctgaatttcaaaaatcaagatgacgtacttctcttcagagaccgtttt
gatggctacgtcttcattgataatcgaggacaagaatatcctgccattgttgagtttgca
ccattccagaaagttgctaagaaaagaagcaagaagaaggatgccaaaagtggaacaatt
gaagatgatgctgattacaaaaaatttttggagttctacaatggtgatgaggagaaattt
ccttccaatcctgagaccttacttgaggaaatagaggccaggacaaaagaactcagtggt
aaaaaaacgacacctctcttggacttccttaagaataaacagaggattagagaagagaag
aaagaagagaggagacggagagagttagaacgcaaacgcttgcgagatgaagaacggcgt
aagtggagagaagaggacagaagaaaaagaaaagaggctgagaaatttaaaaagggagaa
aaggcatctgataaagataaggaacaacctaaagatgaacagccaaaaatcaagctctta
agaaaaccagagaaagcagacaatggtgatactgagaagctaaaagacaagcctaagaaa
caagaccgagagaaacagaaggaagatcgacctgagatgaagaagcgacagaatggtgaa
cacagagaggagaaggggggcagatcagaggatagtgggcataaagattacagagatcgt
gatggagacagagagcgagaccgggacagagacagagagcgaagacaaaaagaaaaagaa
cgtatcagacggcaggatgaggaacgaaggaggagaagggaacgtcaggatggagaaaac
acctacaaaaagagagaggaggaaggaaagaaagacaaggagcgtgtttgggagaaaaga
aggcatgaaaacactggagagtcctcagttaatgctcatcctgaaaagccatcaaaagac
aacaaaaaggaagaaagtgccaaaaaggatcgtctgagaaataaggatcggcctgcgatt
cagctgtaccagcctgggtcgaggacccgtacccggggaggaggtcgagatggagatgga
caggctgagctggagtccaagaatagccaagagaaagtggccgagtga
DBGET
integrated database retrieval system
