KEGG   Pimephales promelas (fathead minnow): 120474422
Entry
120474422         CDS       T08155                                 
Symbol
cul4b
Name
(RefSeq) cullin-4B isoform X1
  KO
K10609  cullin 4
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03420  Nucleotide excision repair
pprm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120474422 (cul4b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    120474422 (cul4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pprm04121]
    120474422 (cul4b)
   03400 DNA repair and recombination proteins [BR:pprm03400]
    120474422 (cul4b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pprm04147]
    120474422 (cul4b)
Ubiquitin system [BR:pprm04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     120474422 (cul4b)
DNA repair and recombination proteins [BR:pprm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      120474422 (cul4b)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      120474422 (cul4b)
Exosome [BR:pprm04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120474422 (cul4b)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 SecA_SW
Other DBs
NCBI-GeneID: 120474422
NCBI-ProteinID: XP_039520605
LinkDB
Position
Unknown
AA seq 862 aa
MFPTGLPSPNPPPPAQEPKPVASDVHNDSSLTSSKKRKINSSEKEDIDSISSSPKAICNS
SSTTSCSSSSQQLQQHIQKKLRFEDPLDLIGLDVKMAEESCNPAESCSKARNVFLAGGVG
HHANGLTKSAGSATFSNSKPGAAKKLVIKNFKEKPKLPENYTNETWQKLKEAVEAIQNST
SIKYNLEELYQAVENLCSHKISAKLYKQLRVVCEDHIKAQIDQFREDALDSVLFLKKIDK
CWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKTIDGIL
LLIERERSGEAVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQEREVP
EYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTAILQKGLNNLLDENRIQ
DLSLLYQLFSRVRGGIQVLLQHWVEYIKVFGSTIVINPEKDKTMVQELLDFKDKVDHIID
VCFMKNEKFVNGMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDKIM
IIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKD
MELSKDIMVQFKQHMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTF
YLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEDIKLAT
GIEDGELRRTLQSLACGKARVLTKTPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMKET
VEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIE
SLIDRDYMERDKENPNQYNYVA
NT seq 2589 nt   +upstreamnt  +downstreamnt
atgtttccaacaggtttaccttcccctaatcccccaccgccagcccaagagcccaaaccg
gtagcttctgatgtccacaacgacagtagcttaacgtcttctaagaagaggaaaattaac
agttcagaaaaggaagatattgattcgatatcttcgtctcctaaagccatttgtaattcc
tcatccacaacgtcctgctcctccagttcacagcagctgcagcagcacatccagaagaag
ttgaggttcgaggacccgctggatttgatcgggctggatgtgaaaatggccgaggagtcg
tgtaaccctgcagaatcttgttcaaaggcgagaaatgtgttcctggctggaggtgttggg
catcatgcgaacggactgaccaagtctgcgggctccgccaccttctccaacagtaaaccc
ggtgctgcgaagaaacttgttatcaagaactttaaagaaaagccaaaattaccagagaat
tacacaaatgagacctggcagaaactgaaggaggcagtagaggccatacagaacagcaca
tcaattaagtataatctagaggagctctatcaggctgttgaaaacctgtgctcccataag
atatcagccaagctctataaacagctcagagtggtctgtgaagaccatatcaaggcacag
attgaccagttcagagaggatgccctagacagtgttctgttcctcaagaaaatagacaaa
tgctggcaagatcattgcagacaaatgatcatgattaggagtatatttttgtttttggat
cgcacatatgttttacaaaattcaatgctgccatcaatctgggacatgggcttggaattg
tttcgtttctatatcatcagcgacctgaaggtgcaaagtaagacaatcgatgggatttta
cttcttattgagagagagcggagtggagaggccgtagatcgcagtctcctgaggagtctt
ctgagcatgctctcagatctgcagatttatcaggattcatttgagcaacgctttctggag
gagacaaaccgattgtatgctgcagagggccagaggctcatgcaggaaagagaggtgcca
gagtatctacaccatgtcaacaaacgtctggaagaggaggcagacagagtcattacatac
ttggaccagagcacacaaaaacccctcattgccacagttgaaaagcaactgcttggagaa
cacctcactgcaatacttcagaaaggcttgaataacctgctggatgagaaccgtattcag
gatctgtctctgctgtatcagctcttcagtcgtgtgagaggaggcattcaggttctgctg
caacattgggttgagtacataaaggtctttggtagcacaatcgtaatcaacccagagaaa
gataagacgatggttcaggagcttctggattttaaggataaagtcgatcacatcatcgat
gtttgtttcatgaagaacgagaagtttgtaaatggcatgaaggaggccttcgagaccttt
atcaacaaacggccgaacaaacctgcagagctcatagcaaaatatgtggattcaaagctc
cgtgctgggaacaaagaagcgactgatgaggaactcgagaaaatgttggacaagataatg
atcatattcaggttcatttacgggaaagatgtttttgaggccttctacaagaaagactta
gcgaagaggttactggtgggaaagagtgcctctgtagatgcagagaagtcaatgctgtca
aaactgaagcatgaatgtggagctgcatttactagtaaactggaaggaatgttcaaggac
atggagctgtcaaaagatattatggtgcagttcaaacaacacatgcaatgccaaaatatt
cctgggaacatcgagttgacggttaacatcctcaccatgggttattggccaacatacgtc
cccatggaagtgcatctgcctccagagatggtaaaattacaggagattttcaaaacgttt
taccttggtaaacacagtggacggaaactacagtggcagtcgacgttaggacattgtgtt
ttaaaggcagaattcaaagagggcaaaaaagagctgcaggtgtctctgtttcagacacta
gttttgcttatgtttaatgaaggggaggagttctctctggaggacattaaactggctaca
ggcattgaggacggtgagctgaggcggactctgcagtcactggcctgtgggaaggcacgt
gtcctcaccaaaaccccaaagagtaaagacgtggaggatggagacaagttctcatgtaat
gatgatttcaaacacaaactcttcagaattaaaatcaaccagatccagatgaaagaaacg
gtggaggagcaagccagcactacagagagagtattccaggaccgtcagtaccaaatcgat
gctgccattgttcgaatcatgaagatgaggaaaactctcagccataatcttctggtgtct
gaggtgtacaaccaacttaaattcccagtaaagcctgctgatctgaagaaaaggatagag
tcacttattgacagggactacatggaaagggataaggagaatcccaatcaatacaactat
gtggcttag

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