Pimephales promelas (fathead minnow): 120474497
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Entry
120474497 CDS
T08155
Symbol
pdzrn3b
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase PDZRN3-B
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120474497 (pdzrn3b)
Enzymes [BR:
pprm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120474497 (pdzrn3b)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120474497 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
zf-rbx1
U-box
TRAF3_RING
RING_XB3-XBAT31
TRAF2_zf
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
120474497
NCBI-ProteinID:
XP_039520728
LinkDB
All DBs
Position
Unknown
AA seq
1055 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKIVKLQHLAEHAEMCDYSPAKCRNKGCSEVL
NLKDMDAHMRESCDYRAVGICESGCGLMLTHKEQKLDNHCCLKALKAHNGALQGKVVSLD
KELKKQALKSTKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKSLSPPCKGG
ETKSVMAILHRDSGSLGFNIVGGRPCADNKDGTSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKATHDQAVEAFRMAKEPIMVQVLRRAPRPKPTGQLXEGQVVDISTQTDIT
FQHIMALSKLPTSSPPGDVLEQYLLPEGHSPAHEYFDPNDFLEGMQHEMEREELEYEEVD
LYRTNVQDKLGFTVCYRTDDEDETGIYVSEIDPNSIAARDGRIREGDRIIQINGIEIQNR
EEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSHHHEKDSGVGRTDDSTRNDESSEQENLADDQTSASTTLG
SRRRLAYSQDTLGSGDLPFSSESFISADYGDADFLGDFPADECERFRELLELKCQIQSTG
SSGTPEQSLFWPSGGQGGGQGGVGEEGVDKELELLNEELRSIELECLSIVRAHRMQQLRE
QCREQSWMLHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLE
LSPDNSLRRGNENQAEAGASSGTSGGSRILKPLLSPVQEACSPSRGRPTLLKESEAGIQP
ELRERKVGRHAQPQSPYKHAHIPAHAQHYQSYMQLIQQKSVEYAQSQMSLVSMCRDPVAS
ADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAISEMKMGRY
WSKEERKQHAVRAKEQRQRREFMKQSRIDCLKDQGGSAEDKKELNIIELSHKKMMKKRNK
KIFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcgtttcaaaggggctgtggacccagacttcaaatgcaacttg
tgtaataaagttttggaggatccgctcaccaccccgtgcggtcacgtcttctgcgccggc
tgtgtgctgccgtgggtcgttcagcagagcagctgcccggtcaaatgccaaaggatctcc
accaaagagctcaaccacgtccttcctctcaaaaacttaatattaaagttggacattaaa
tgtgacaatcacgcgcggggctgcgagaagatcgtcaaacttcagcatctggcggagcac
gcggagatgtgcgattattctcctgccaaatgtaggaataagggctgcagcgaggtgctg
aaccttaaagatatggatgctcacatgcgtgaatcgtgtgattacagagcggtcgggata
tgcgagagtggatgcggattgatgctcactcataaggagcagaagttggacaaccactgc
tgtttgaaagccctcaaagcgcacaacggcgcgctgcaagggaaagttgtcagcttggat
aaggagctgaagaaacaagctctgaaatcgactaaaagagagaaatcacttttggcgcaa
ctgtctgctgttcataacgagcttcagatgacagcgctgaagtatcagaagaaattcacg
gaatacagcgccaggattgactcgctgtcaaagagtctctctccaccgtgtaagggcgga
gagaccaaaagtgtcatggctatactccatcgtgattctggatctttaggcttcaatatt
gttggaggaaggccatgtgcggataataaagatggcacttcgaatgaaggaatctttgtg
tcgaagattgtggagaatggtccggcggataaagaaggaggtctgcagatccatgacagg
ataatggaggtcaatggaaaggacttgtcgaaggcgacccacgaccaggcagtggaagcc
ttccgtatggctaaagagcctattatggtccaggtgctacgccgtgctcccagacccaaa
cctactggccaactgngggaagggcaggtagtggacatcagcacccagacagacatcacc
ttccaacatatcatggccctcagtaagctgcctacgtcctccccgcctggggatgttctt
gaacagtacctgctcccagagggacactctcctgctcatgaatactttgaccccaatgat
ttcctcgaaggaatgcagcatgagatggaaagagaggagctagaatatgaggaagtggat
ttatacagaactaatgtccaggataaattggggtttactgtgtgctacaggaccgatgat
gaggatgagacggggatctatgtcagtgagattgatccgaacagcattgcggcaagagat
ggacgaattcgagagggagatcgaatcatccagatcaatggcattgagatccagaaccgt
gaggaagcagtggctcttttaaccagtgaagaacacccaaatgtgtgcctgctattggct
cgaccggagatacagctggatgaaggctggatggatgatgacagaaacgactacctggat
gacctccacatggatatgttggagcaacaacaccatcaggcgatgcagttcacggcaagc
atgctccagcagaagaagcacgaggaagatggaggtacaacagacaccgccacgctgctc
tcccaccaccatgagaaggacagtggagtgggccgcactgacgacagcactcgtaacgat
gagagttctgagcaggagaaccttgcagacgaccaaaccagcgcctccaccacgctaggc
agccggcgcaggctcgcatacagtcaggacaccctaggtagtggcgacctccccttcagc
agcgagtctttcatttccgcagactatggggacgcagacttcttgggtgactttcctgct
gacgaatgtgaacggtttcgtgagcttttggagctcaagtgccagatacagagcacaggg
agcagtggtacaccagagcagagcttgttctggcccagtggcggacagggtggaggacag
ggtggcgtcggcgaggagggcgtcgacaaagagctggagcttctgaatgaggagctccgc
agcattgagcttgagtgcctgagcatagtccgagcgcaccgcatgcagcagttgcgcgag
cagtgccgcgaacagtcctggatgctgcacaacagcggcttccgcaactacaacacaagc
gtggatgcaagacgccacgagctggcggacatcagcgaactcccagaaaagtcagacaag
gacagctccagcgcgtacaacacaggagaaagttgccgtagcacgccactcactctagag
ctctccccggacaactccttgcggcgtggaaatgaaaatcaggcggaggcaggggcaagt
agcggtacatcgggtggcagcagaattcttaaacctttgctatcacccgtccaagaggct
tgcagccccagcaggggtcgcccaaccttattgaaagagtcggaagctggaatccagcca
gaactccgagagcgcaaagtaggtcgccatgcccagccccaatcgccctacaaacacgca
cacatcccagcccacgcccaacactaccagagctacatgcaactgatccagcaaaaatca
gtggagtacgcccaaagccaaatgagcctagtcagcatgtgccgggaccccgtcgcttct
gctgacttgggacccaagatggaatggaaagtgaagatccggagtgatggtacacgctac
attaccaagcggcccgtccgggacaagctcctgaaagagcgagccttacggatccgggaa
gagcgcagcgggatgactacagatgacgatgccatcagcgaaatgaagatgggtcgctac
tggagcaaagaggagcgcaagcaacacgccgttcgtgccaaagagcagcgccagcgcagg
gagttcatgaagcagagccgaattgactgtctgaaggatcaaggaggcagcgctgaagac
aagaaggagctcaacatcattgaactgagtcacaaaaagatgatgaagaagcggaacaag
aaaattttcgacaattggatgactatccaggaactgttgacccatggtacaaagtccccc
gatgggacacgagtgtacaactccctactgtcagtgaccacggtgtag
DBGET
integrated database retrieval system
