Pimephales promelas (fathead minnow): 120474584
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Entry
120474584 CDS
T08155
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120474584 (trub1)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
120474584 (trub1)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120474584 (trub1)
Prokaryotic type
120474584 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PseudoU_synth_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
120474584
NCBI-ProteinID:
XP_039520929
LinkDB
All DBs
Position
Unknown
AA seq
291 aa
AA seq
DB search
MAGVSTLQNGSLSKLQSLHGIFAIYKKEGPTSADVLNTLKKALLKEAGVANPNPRKRKKQ
PLKIGHGGTLDSNASGVLVVGIGEGTKMLTTMLAGSKKYRAVGELGKATDTLDVTGNVVE
EKSYDHITKEAFEEKLKQFTGEIMQVPPLYSALKKDGKRMSVLLKQGQEVEAKPARPVTV
YSLSLQDFSPPLFTIDVECGGGFYVRSLVDDLAKGLLSCAHIKELSRTKQGQFTLEEHAL
KEECWTLADISRVLQPCPNPSEQQKNAKKAKSKQKPGPSESKGDDGDHNSD
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctggtgtgtcaactttacagaacggttcattatccaaactgcagtctctgcatggt
atatttgccatctataagaaagagggtcccacctcagctgacgtgttaaacacactgaag
aaggcgcttttaaaagaggcaggtgttgcaaatcccaaccctcggaaaaggaagaagcaa
cctttaaaaattggccatggcggcaccctggacagcaatgcttctggtgtacttgtggtt
ggaattggtgaagggacaaagatgctcaccacaatgcttgcgggatcaaagaaatacaga
gctgttggagaattaggcaaagcaactgacactcttgacgtcactggaaatgttgttgaa
gagaagagttatgatcacatcacaaaagaggcttttgaggagaagctgaaacagtttacg
ggtgaaattatgcaggttccacctttatattcagcactgaagaaggatggcaagcgcatg
tctgtccttctcaagcaaggtcaagaggttgaggctaaacctgcacgtccagttacagtg
tacagtctctctttacaagacttcagccccccacttttcaccatagatgtggagtgtgga
ggtgggttttatgtcagaagtctggttgatgatctggccaaaggtctgttatcctgtgct
cacattaaagaactgtcccggacaaagcagggtcaattcacactggaagaacacgcattg
aaggaagaatgttggacgttggcagatatatcacgggttctgcagccctgcccaaatcca
tcagagcaacaaaagaatgccaagaaagcaaaatcaaagcaaaagcctggcccatctgaa
tctaagggtgatgatggagatcacaacagtgactaa
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