Pimephales promelas (fathead minnow): 120474946
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Entry
120474946 CDS
T08155
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pprm01009
]
120474946 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120474946 (hdac6)
04131 Membrane trafficking [BR:
pprm04131
]
120474946 (hdac6)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120474946 (hdac6)
Enzymes [BR:
pprm01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
120474946 (hdac6)
Protein phosphatases and associated proteins [BR:
pprm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120474946 (hdac6)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
120474946 (hdac6)
Membrane trafficking [BR:
pprm04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
120474946 (hdac6)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
120474946 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
120474946
NCBI-ProteinID:
XP_039521534
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MDPGPDSTRSPREKPETKRENNNPNRKKSLQEARRKGRMDRSKVEEEMSNLDVCGKTKAS
GTGLVYIDAFTHFHCLWDASHPECPARVSTVMETLETQGLLGRCVRVEARAVTEDELLLV
HTKDYVELMKSTQKMTEEELKTLSDKYDSVYLHPEFFTSACLAVGSVLQLVDKVMTSQLR
NGFSINRPPGHHAQADKMNGYCMFNNLAIAARYAQKQHGVERVLIVDWDVHHGQGIQYIF
EEDPSVLYFSVHRYEDGSFWPHLKASDSSSVGSGAGQGYNINLPWNKVGMEDGDYITAFQ
QLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRVSPQCFSILTHMLKAVAQGRLVLALEG
GYNLQSIAEGVCASVRSLLGDPCPHLTSPGASSESALNSISKTISALYPFWKSLQTFEGG
PLSDVPPLPAPVCPEVKVSSSITGLVYDQRMMLHHNIWDGHHPELPQRISRIFSRHEELG
LLSRCHRIPARLATEEELALCHSSKHISIIKSTEHMKPRDLNRLGNDYNSIYINNESYTC
ALMAAGSCFNSVQAILTGQVRNGVAIVRPPGHHAEKDTACGFCFFNTAALAARYAQSITH
KSLRVLILDWDVHHGNGTQHIFEDDDSVLYISLHRYEDGTFFPNSEDANYDKVGQGKGRG
YNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGYQVTPEG
YAHFTHQLTGLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPLLDHLPPPKTSAAV
TINNVLRAHAPFWSSLRIQIPESLRLSLPSPKPKGKRGSSKKSPRQSTPAQSPGQKPPNL
EQSGLDELTEDLLSLNLNTSSNTSPASVAIGGARRKVKPNPQRNSAGQESPLKPSPEKAG
DGDSAHAEITSDQSIRASVVTGNPAGMCDQESCGLDAACGNAPKTVIEVFGQQPTDVDGM
YVVNPLPWCPHLESVRPVPAGGIDVFLPCEECGGDAENWICLFCYKVLCGRYVNQHMVTH
GQVSGHPLVLSFADLSVWCYACESYIHNKVLHEAKNAAHLMKFGEEISPFS
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggatcctggtccagattctactcgttctccaagagaaaaaccagaaaccaaaagagaa
aacaacaacccgaaccgtaagaagagtctacaggaggcacggaggaaaggtagaatggac
cggagcaaagtggaggaagagatgagcaacctggatgtgtgtgggaagactaaagcatca
ggaacaggtcttgtctatatagatgccttcactcactttcactgcctctgggatgccagt
cacccagagtgtccagcgagagtgagcactgtaatggagactctagagacgcaggggctg
ctgggacgctgtgtacgagtcgaggccagagctgtaacagaagatgagctcttactcgtc
catacaaaggattatgtagagctgatgaaatcaacccagaaaatgacagaggaggagctg
aagactctctctgataaatacgactctgtctacctgcatcctgaatttttcacctcagcc
tgtctggcggtgggatcagttctccagctggtggataaagtgatgacatcacagctgcgt
aacggcttctccatcaacaggcctccgggtcaccacgctcaggcagataagatgaacggc
tactgtatgtttaataatctggccatagcggcgcgctacgctcaaaaacagcatggagtt
gaacgagttctaattgtggattgggacgtgcatcatggacagggaatccagtatattttt
gaagaggatcccagtgtgctgtatttctcagtgcacagatatgaagatggctcgttctgg
ccgcatctcaaggcgtctgacagcagctcggtgggttcaggagcaggacagggctacaat
atcaacctgccctggaacaaggtagggatggaggatggagattacatcacagctttccag
cagcttctcctgcctgtggcgtatgagtttcagcctcaactggtgttagtggcggccggc
tttgactctgtgatcggtgatccaaagggtgagatgcgagtgagtccacaatgtttctcc
atcctgacccatatgctgaaagctgtagcacagggccgactcgtgctggctctggagggt
gggtataacctccagtccatagcggagggtgtttgcgctagtgtgaggtcactgctgggt
gacccttgccctcacctgacctctcctggtgcttcgagtgagagtgccctgaactccatc
tcaaagaccatctctgccttgtatccattttggaaaagtcttcagacttttgaggggggt
cctctgtccgatgtccctcccctgcccgctccagtgtgtcctgaagtgaaggtttcctct
tcaatcactgggctagtgtatgaccagagaatgatgcttcatcacaacatatgggatggt
catcatccagagctcccacagagaatttcacggatcttttcccgacacgaggagttgggc
ctgctgtcccgttgccatcggataccagctcgcttggcaacagaagaagagctggcatta
tgtcacagctctaaacacataagcattattaagagtacggagcacatgaaaccaagagat
ctgaaccgactggggaacgattacaactccatctacatcaataatgagagctacacctgt
gccctgatggccgccggctcatgcttcaactccgtacaggccatactcacaggccaggtg
agaaacggcgtggccatagtccgtcctccgggtcatcatgcagagaaagacacagcttgc
ggtttctgtttctttaatacggccgctttggccgcacgctatgcccagagcatcacacac
aaatccctgcgtgtcctcatcctcgattgggatgttcatcatggaaacggcacacagcac
atctttgaggacgatgacagcgttctgtacatttctctgcatcgttatgaagacgggacg
tttttccccaactcggaggatgctaactatgacaaggtggggcaagggaaaggcagagga
tacaatgtcaacatcccctggaatggaggaaagatgggagacccagaatacatggcagct
tttcatcacttagttatgccaatagccagagagtttgccccagagctggtgctggtgtct
gctgggtttgatgcggcacggggggatccgttaggagggtatcaggtgaccccagagggc
tatgcccacttcacgcatcagttgactggtctggcagcaggaagagtgctagtcatactg
gagggaggatataacctcacctccatctctgagtccatgtccatgtgcaccagtatgttg
ctgggagactcccctccacttctggaccatctgccccctcccaagaccagcgctgctgtc
accatcaacaacgtcctgcgtgcccacgcccccttctggagctccctgagaatacagatt
ccagagtcccttcgtttgtctttgccgtctcctaaaccgaaaggcaagcggggatcgagc
aagaaatcgcctcgccagtccacccctgctcagagtcccggacagaaaccgcccaatctt
gagcagtccggccttgacgagctcactgaggatctgctttctctgaatctcaacacctca
tcaaacaccagccctgcgtcggttgcaattggaggagccagacgtaaggtgaaacccaac
ccacagaggaattcggcaggccaggagtcacccctgaaaccctcgccagagaaagccgga
gatggagacagcgcacatgcagagataacatctgaccagtccatccgagcgtctgtggtc
actggaaatcctgctggcatgtgtgaccaggagagctgtggtctggatgctgcttgtggt
aacgctccgaagacagtcattgaggttttcggacaacaacccacggatgtggacggcatg
tatgtggtgaacccgttgccatggtgcccacacttggagtccgtgcgaccggtccccgct
ggtggcattgatgtcttcctgccgtgtgaagagtgtggaggtgatgctgaaaactggatc
tgcctcttctgctacaaggtgctctgcgggcgttatgtgaaccagcacatggtgacccac
gggcaggtgtcgggtcaccctctggtgctgagcttcgctgatctttctgtctggtgctac
gcttgtgagtcatacatccacaacaaggtgctccatgaagccaaaaacgctgctcacctc
atgaagttcggagaggagatttctcctttcagctaa
DBGET
integrated database retrieval system
