Pimephales promelas (fathead minnow): 120474947
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Entry
120474947 CDS
T08155
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03013
Nucleocytoplasmic transport
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120474947
03015 mRNA surveillance pathway
120474947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120474947
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120474947
5.6.2.5 RNA 5'-3' helicase
120474947
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120474947
mRNA cycle factors
Common to processing body (P body) and stress granule
120474947
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120474947
NCBI-ProteinID:
XP_039521531
LinkDB
All DBs
Position
Unknown
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSNTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcaaacgctcaccttcctggacacggaggaa
acggagcttctcggggccgacacgcagggctccgagttcgagttcaccgactttacattg
cccagccagacccaaacccaaggccagacccagagtcagctcgacaaccaggtaaacggg
cctgacggagttctgcccaacggagaagatgcagtggtgaagaccagccaacttctggcc
gagctgaactttgaagaggatgaggaagatacttactacactaaagatctgcccgtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtttactgcaacaccagcaag
aaatggttttgcaatggccggggcaacacctctggcagtcatattgtgaaccatttggtg
agggccaaatgtaaggaggtgacgctgcataaggacgggccgctgggagagacggttctc
gaatgctataactgcggctgccgtaacgtcttccttctcggcttcatcccggctaaagca
gactctgtcgtggtgcttttgtgcaggcagccgtgcgcgagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagccgctcatccaggaccgttgctttctgtcctgg
ttggtgaagatcccatccgagcaggagcagctgagggcccgtcagatcacggcccagcag
attaacaaactcgaggagctctggaaggaaaacccaacagcgaccctggaagatttggag
aaacctggagtggatgaggaacctcagcacgttctgctacgctacgaagatgcctatcag
taccagaacatttttggtccgctggtcaaactagaggctgactacgacaagaaactcaaa
gagtcccaaactcaagacaatataactgtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacttggctccactctggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgagattgccattgagctgcgcagcagtgcaggg
gctcctgtggaggtgccgcacaacttccaggtggacttcgtgtggaagtcgacatctttt
gaccgaatgcagagcgccctgaagacgtttgctgtggatgagacctcggtgtctggctac
atctaccacaagctgctgggtcacgaggtggaggacgttatcatcaaatgccagcttccc
aaacgcttcactgcgcagggcctgccggacctcaaccactcgcaggtgtatgctgtgaag
acggtgctgcagcgacccctcagtctgatccaggggcctccaggaaccggcaagactgtc
acctctgccactatagtctaccatctggccagacagggcaatggtccagtgctggtttgt
gctccgagtaacatcgcagtggaccagctgaccgagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattcaccggtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgagactggcgagctgtcgtcttctgatgagaaacgttaccgagctctcaaacga
accgcagagagagagctgctcatgaacgcagatgtgatctgttgcacatgtgtgggtgcg
ggtgaccctcgcctggcaaagatgcagttccgctccattctcatcgatgagagcacccag
gccacggagcccgagtgcatggtgcccgtggtgctcggggccaaacagctgattctggtg
ggtgaccactgccagttgggtcctgtggtcatgtgcaagaaggcggctaaagcgggtctt
tctcagtctctgtttgagaggctggtggtcctgggtatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggcgctcagcgctttcccttcaaatatcttctatgagggttct
ctgcagaacggggtcactgccgctgatcgcatcaagaaaggctttgacttccagtggcct
cagccggataagcccatgtttttctacgtgactcagggtcaggaggagatcgcaagctct
ggcacctcctatctcaacaggactgaagctgctaatgtggagaagatcaccactcgtctg
ctgaaggccggagccaaacctgaccagattggcattatcacgccgtacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactctaccaggag
gtggagatcgccagtgtagatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagccaatgagcaccagggcatcggcttcctgaacgacccacgtcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtcc
aagcagcctttgtggaaccacctgctgaattactacaaggagcagaaggttctggtggag
ggtccactcaataacctgagagagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggggcacgtttcatgagcactgccatgtatgatgcgagagaggcc
atgattcctggatctgtgtatgaccgcagcaacactggtcgtccatctaatatgtacttc
cagacccatgatcaggttggcatgatcgggaccggaccaaaccctatgggctccatgaac
attcccatcccgttcaatcttgtcatgccgcccatgcctccgcccgggtacctgggccag
gtgaacggacccgctgcaggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgccagaggaaccgtggcacagggaaccatggcagtgggcaggccaacatgccgagcagc
caggccagtcaggatctggtgtcccagcccttctcccagggtcctctgacccagggctac
atcaccatgagccagccttcacagatgagccagcctggcctgtcccagcctgagctctca
caggacagctacctgggggatgagttcaaatcccagatggatgtggcgctctcccaggat
tcaacctaccagggcgaacgggcttatcagcacggaggagtgactggactctcacagtac
tag
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integrated database retrieval system
