KEGG   Pimephales promelas (fathead minnow): 120475871
Entry
120475871         CDS       T08155                                 
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm04140  Autophagy - animal
pprm04142  Lysosome biogenesis
pprm04148  Efferocytosis
pprm05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    120475871 (vps41)
   04140 Autophagy - animal
    120475871 (vps41)
   04148 Efferocytosis
    120475871 (vps41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    120475871 (vps41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pprm04131]
    120475871 (vps41)
Membrane trafficking [BR:pprm04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    120475871 (vps41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin VPS18_solenoid_2nd WD40_CDC20-Fz zf_RING_Vps8_fungal Beta-prop_RIG_2nd WD40_Prp19 Beta-prop_HPS5 WD40_WDHD1_1st Vps39_1 TPR_7 Beta-prop_EML_2 Beta-prop_IFT122_1st Beta-prop_THOC3 zf_RING_Vps8 TPR_YpiA Beta-prop_WDR3_2nd zf-RING_5 Frtz Beta-prop_IFT140_2nd zf-Vps39_C CFAP251_N MIB_arm Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 120475871
NCBI-ProteinID: XP_039522593
LinkDB
Position
Unknown
AA seq 854 aa
MAEVEEQGRKLSEESTDESEEEDTEEEPKLKYERLTNGVTEILQKDAASCMTVHDKFLAL
GTHFGKVYLLDIQGNVTQKFEISPVKINQISLDESGDHVGVCSEDGKVQVFGLYTREGFH
ENFDCPIKVMALHPQFIKSNNKQFVTGGNKLLLYERNWLNRWKTSVLHEGEGNITNVKWR
GNLIAWANNVGVKIYDIASKQRITNVLRDNTSLRPDMYPCSLCWKDNTTLIIGWGSSVKI
CAVKERDPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYYVKESSEDMEEEFRT
RPRLDIIQPLPEGCEEISSDALTVRNFQENQCRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVERGDYDTAARKCQK
VLGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATLI
REWPGELYNNMAIVQAVNEHLKKDQTNSILLTTLAELYTYDQRYDRALEIYLKLRHKDVY
QLIHKHNLFSSIKDKIVLLMDFDKEKAVDMLLDNEDKISIDKVVDELKDRPELLHVYLHK
LFKRDHHKGQKYHERQISLYAEFDRPNLLPFLRESMHCPLEKALEICQQRHFVEETVFLL
SRMGNCRRALQMIMEELADVDKAIEFAKEQDDRELWEDLISYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQRMHRTQK
RGVRVDEENICESCHTPILPPDTAQAFGVVVFHCRHMFHKECLPSPGTVLGTQYCNICSA
KRRGPGSGILDMKK
NT seq 2565 nt   +upstreamnt  +downstreamnt
atggcggaagtggaggagcagggaagaaaactaagtgaagaatcaacagatgaatcagag
gaggaggacacggaggaggagcctaaactgaagtacgagaggctgaccaatggcgtgaca
gagatcttgcagaaggatgcggccagctgcatgacggtgcatgacaagttcctggctctt
gggacacactttgggaaggtttaccttctggatatccaaggaaatgttacacagaagttt
gaaattagtccagtgaaaataaaccagattagtttggatgagagcggtgatcatgttggc
gtctgctctgaggatggaaaggtacaagtgttcggcctgtacaccagggagggcttccac
gaaaactttgactgcccgatcaaggttatggcgctacaccctcaattcatcaagtccaac
aataagcagtttgtgactggaggaaataagcttttgctttatgagaggaactggctgaac
cgttggaagacctctgttctgcatgaaggagagggaaacataaccaatgtgaagtggaga
ggcaacctcattgcctgggcaaacaatgtgggtgtgaaaatctatgacatcgccagtaaa
cagcgcatcactaatgtgttgcgggacaacacaagtctaaggccggatatgtatccctgc
agtctttgctggaaagacaacaccacactgatcatcggatggggctcttctgttaagata
tgtgctgttaaagagcgtgacccgacagagatgagagatctacccagtcgctacgttgag
attgtgtcagcatttgagaccgagttcttcattagtggactggcgcctttagcagatcag
ctagtcactctgtactatgtcaaagaaagctctgaggacatggaggaagagttcagaaca
cggcctcgtttagacatcatccagccgttacccgagggctgtgaggagatctcatccgat
gctctcactgtacgcaacttccaggagaaccagtgcagggactacaggctcgaacactca
gagggagagtctctattctatataatcagtcctaaagacattgtagtggctaaagaaaga
gaccaggatgaccacatcgactggcttctggagaagaagaaatatgaggaagcactgatg
gctgcagagatcagcttcaaaaacattaaacgtcatgacgtacagaaaattggaatggcg
tacattaatcatctggtggagagaggagattatgacacggctgccagaaagtgtcaaaaa
gtgcttggaaagaacatggatctctgggagaatgaggtgtacaggttcaaaaccattgga
cagctgaaagcgatcagtcagtacttaccaagaggagacctacgtcttagaccagcgatt
tatgagatgatccttcatgagttcctcaagactgattatgagggttttgccacactgatt
cgtgaatggccaggagagctgtataacaacatggctatagttcaggcagtgaatgaacac
ctgaagaaggaccaaaccaacagcattctcctcaccacactggctgagctgtacacgtat
gatcagcgttacgatcgcgctctggagatctacctgaaactgagacataaagatgtttac
cagctcattcacaaacacaacctcttctcctccatcaaggacaagattgtcctgctcatg
gattttgacaaagagaaagctgttgacatgctgctggataatgaagataaaatatcgatc
gacaaagtggtggatgaattaaaagacagacctgagctgttacatgtgtatttgcacaag
ctgtttaagcgagaccaccataaggggcagaagtaccatgagaggcagatcagtttgtat
gcggagtttgaccgacccaacctactgcccttcctcagggaaagcatgcactgcccgctg
gagaaggctttggaaatctgtcagcagaggcactttgtagaagagacggtcttcctgctc
agtcgaatgggaaactgcagacgtgccctacagatgatcatggaggagctggcggatgtg
gacaaggccatcgagtttgccaaagagcaggatgaccgagaactctgggaggatctcatc
tcttactccatagacaaaccaccgttcatcacaggcctcttgaataacatcggaacccac
gtggaccccatcctgctcattcaccgcattaaagaagggatggagattcctaacctcaga
gactctctggtcaaaatcctacaggactacaatctacagatcttactgagagagggctgt
aagaagatcctggtggccgattcgctgtctcttctacagaggatgcacaggacacagaag
agaggagtgcgggtggatgaggaaaatatctgtgaatcctgccacactcctattctacca
ccagacacggctcaagcgtttggtgtggtggtttttcactgcagacacatgttccacaag
gagtgtctcccatccccaggaactgttctaggaacacagtattgtaacatctgcagtgca
aagcggagaggcccgggcagtggcatactggatatgaagaaataa

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