Pimephales promelas (fathead minnow): 120475874
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Entry
120475874 CDS
T08155
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120475874 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprm03032
]
120475874 (topbp1)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120475874 (topbp1)
DNA replication proteins [BR:
pprm03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120475874 (topbp1)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120475874 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
120475874
NCBI-ProteinID:
XP_039522601
LinkDB
All DBs
Position
Unknown
AA seq
1523 aa
AA seq
DB search
MSKGNKDAYIVKFVERNGQKTELALQAYKAIVELQSEKYVQTVDEEAALELDQNDKSLFV
FSDFTSNSFDHCRRLGCRIVSPLVVLFCLQKQRCVPKAEQPVYNMAMADITISCTNLDRE
ARSEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPILLPSWVKACWEKS
QDSVFHHSELNIEDYRCPVLKGCTVCVTGLSTVDRKEVQRLCSQNGGSYTGQLKMNECTH
LIVNEPTGQKYEFARKWNVYCVSLHWLFDSIEKGFCQDESRYVMGRGEKKRTEEKAGRPN
TSTPTGGSKKKEEGPSLLGLSHISNISMNVNETALTTAGISHIETPDPVDSFDITVCRVD
DLLDGCKLYLCGLSGKKLEKLRRMVNSAGGLRFNQPSQELTHIVMGEPDQRVKVFLDKAT
HRPHIVTVQWLLDSLSHGTLLPEDGYFHPSFLPPAPAAVDLPAPQKAAPRASRPSVAPPP
APSPARQARAEEDLLSQYMEPDQTVVELAQATNSTWSRQSVLLPEPPAAQKDSTLVETSE
GGLFSGKRFILVGFGAEAEAQLSELVMENAGKILVGRSRAVAHYAIVPLLGCDVEATVDE
VVTDTWLAMCLEQQYVLPLASHPLFTPVTVREGFSPLKDCVLSVSQFTGAERDSLIQLAK
HLGASVQDYFVRTANQRKGMLASTHLVLQTPEGSKYQAAQKWGFPAVTIRWVLESARTGK
RADEGRYLVSLPPSPERSEDSFVGASQKEPPPLHLLQRSPELPLLGPQNSAAITPLDTTR
FQSRTVRSAVRKLREGEEEQAEVSTPGQEDAKGALQKDSSLQLDTPSRFLSRDRLFGPTF
NTKDVFDHLQTPGNNPQQGQGAETPLSEVIERNLNAAVANSNRSHVTNLAAITASPQLEK
KEPEPEVEQKTEAPLRGVVVCVSKKLSKKQSELNAVAASLGADFRWSCDDSVTHFIYQGK
VGDNSKEYRAVKERRLHIVSQHWLQACADEQKHVSESLYPFTFNPKMSLTMSQMADSTQR
SPPPSTPRTRLRAFTESEETGLGPNDDITDISTPQRVSVGEPEKDQTLSNERKSITEALE
MRENLQRQLQEIMSATKLTSGRRGSSRLARTGSGGQDSPHTPDSLGRMGRRSRNLEAIRM
SRQVDVDLNTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLALVPLPPSDHT
ANGRDSMTDSELVEMAAFEVIDAQLRPKVTPPRVATLRNPETPEAPSIAFPISKTAAAPL
PPIEDKDQVKKDPPRFLLSSLNPQERIDYSHLIEELDGVVLEKQSFDPSCTHVVVGYPLR
NEKYLAAMAAGKWILHRSYLEACRAEGHFIKEEQYEWGSSSILDALPSINSQQKRLALAA
MRWRKTLHGVSNKEGAFGGWTVMLNIDQAREAGFRRLLQSGGAKVLPDASPSLFPETTHL
FVDFSRLKPGDVRVDISEAAAQGVKCLKPEYIADYLMQEPSPSMDAYYLPGAAADDLEKV
QDTSSRKRKASGDMSTLKKSRVR
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggcaacaaggatgcatatattgtgaaatttgttgagcgcaatggacagaag
actgaactggctctacaggcctataaggcaatagtggaacttcagtcagaaaagtatgtg
cagacggtggacgaggaagccgcactagagctggaccaaaatgacaaatctctgtttgtg
ttcagtgatttcaccagcaattcctttgaccactgcaggaggctgggatgcaggatcgtg
agtcctcttgtagtactgttctgtctgcagaagcagagatgtgttcccaaagcagagcag
cctgtgtacaacatggcaatggctgatatcactatctcctgcaccaatctcgacagagag
gcacggagtgaagtgatggatcttgtccagctgatgggtggacgggtttaccgtgatctc
aacgtgtctgttactcacctggtggcaggtgaagtggggagtaagaaatacctggtggcc
gcaagcctcgggaagcccatcctattgcccagctgggtgaaagcatgctgggaaaagtct
caggatagtgttttccatcactctgagctgaatatagaagactatcggtgtccagttctg
aaaggctgtacagtgtgtgtgacgggactctctactgtggaccgtaaagaggttcagagg
ttgtgcagtcagaatggaggaagctacacgggacagctcaagatgaatgagtgcactcat
ctcattgtcaatgaacccacaggtcagaaatatgagtttgcccgtaaatggaacgtatac
tgtgtgtccctgcactggctgtttgacagcatcgagaagggcttctgtcaggatgagagc
aggtatgtcatggggcgtggagagaagaagagaaccgaggagaaagcgggcagacccaac
acttccactcctacaggaggcagcaagaagaaagaggaaggtccttcacttctgggattg
agtcatatatccaatatcagcatgaatgtaaatgaaacggccctcaccactgcaggaatc
agccacatagagactcctgatccggtcgactcatttgacatcactgtctgtcgagtagat
gacctgttggatggctgtaagttgtacctgtgtggcctttccggaaagaaactggagaaa
ctgaggcggatggtgaactctgctggaggtctgcgctttaaccagcccagccaggagctc
acgcacatagtgatgggagaaccagaccagagggtcaaagtcttccttgacaaagccact
cacagaccccatatagtgaccgtgcagtggctgctggacagtttgagccatggtactttg
ctcccagaggatggctacttccacccatccttcctgccccctgccccagccgctgttgat
ttgccagctccccagaaagctgctccccgtgcctccagaccctctgtagctccccctcct
gcccctagtccagcccgtcaagccagagcagaagaagacctgctctcgcagtacatggag
cctgaccagactgttgtggagctggctcaagccactaatagtacatggagtcggcagagc
gttttgcttccagagcctccagctgcacagaaggactcaaccttggttgaaacctcagag
ggtggcctgttttcagggaagcgcttcatcttggttggttttggagccgaggctgaagcc
cagctctcagagctagtcatggaaaacgctgggaagattttggtgggccgctcgagagca
gtggcgcattacgccatcgtgccactgctgggctgtgacgtagaggccacagtagatgag
gtcgtaacagatacctggctggccatgtgtttggagcagcagtatgtgttgccgttagcc
tctcatcctctattcactccagtgactgtgagagagggcttctctcctctcaaagactgt
gtgctgtccgtcagtcagtttactggagctgagagagactctctcattcagcttgccaaa
cacctgggagcaagtgttcaggattactttgtgcggaccgctaatcaaagaaagggaatg
cttgccagcactcatctggtactccagacacccgagggcagcaagtaccaggcagcccaa
aaatggggtttccctgcagtcacgatacgctgggttttagagtctgccagaacagggaag
cgtgccgatgagggacgatacctggtttccctgccaccctctccagagagaagtgaagac
agttttgttggagcatctcagaaagaaccgccgcctctgcacctcttgcaacgctcccca
gagctacccctactgggcccacaaaacagcgctgccatcacccccctggacacgactcgc
tttcagagccgcactgtccgttcagcagtcaggaagttgagagaaggagaggaggagcag
gcggaggtgtcaaccccaggacaagaggacgccaaaggagccctgcaaaaagactcctcc
ctccaactagacactccctctcgcttcctgagcagagaccgactcttcggaccaacattt
aacactaaggatgtctttgaccatttacagactcctgggaataacccacagcaaggtcag
ggggcggagactcccctgtcagaggtcatcgagagaaaccttaatgctgcagttgccaac
agtaaccgcagtcatgtcacaaacctcgcagccataactgccagtccacagctggaaaaa
aaagagcctgaacctgaggtggagcagaagactgaagctcctctcaggggggtggtggtg
tgtgtgagcaagaaattaagcaagaaacagagtgagctcaatgcagtagctgcctctctc
ggtgcagacttcaggtggtcatgtgacgactctgtcactcatttcatctaccaggggaaa
gttggagacaacagtaaagaatacagagctgtgaaagagagaagactgcatatagtgtca
caacactggctacaggcttgtgcagatgagcagaagcacgtgtcggagtcgctctaccct
ttcactttcaaccccaaaatgagccttaccatgagtcagatggcagattccactcagagg
tcacctccccctagcaccccccgcaccagactcagggcgttcacagagagtgaggagacc
gggcttggccctaatgacgacataacagacatctcgactcctcagcgagtcagtgtggga
gagcctgagaaagatcagaccctcagcaatgagagaaaaagtattacagaagcgctggaa
atgagagagaatcttcaaaggcagcttcaggagatcatgtctgccactaaactgaccagc
ggtcgtcgaggctcctcgcggttggctagaacaggctccggggggcaggactcaccccac
accccggacagcctggggcgaatgggtagacggagccgcaatttagaggccatacggatg
tcacgtcaagtggatgtggacctgaacaccgagccgtctcagagtgagcagatcgtgtgg
gatgatcccaccgcacgagaggagagagcgaaactggccgataacctgcagtggcctgga
agcccctcccagcactccgaacctctagccctcgtcccgctgcccccctctgatcacacg
gccaatggcagggactccatgactgactctgaactggtggaaatggctgcttttgaagtc
attgatgcacaactgaggccaaaggtgaccccgcctcgagtcgccacgctacgaaaccct
gaaacacctgaagctcctagtattgctttccccatttctaaaactgcagccgctcccctt
ccaccgattgaagataaggaccaggtgaagaaggatcctccacgattcctgctgtcttca
ttgaatccacaggaacgcattgactacagccatctcatagaggagctagatggtgttgta
ctagagaagcagagttttgaccccagctgcacccacgtggttgtgggttatcctctgcgc
aatgagaagtatctggccgcaatggcagcgggcaagtggatccttcaccgatcatacctg
gaggcctgccgtgcagaaggacacttcataaaggaggagcagtatgagtggggcagcagc
tctatactggacgctctgccgtccatcaactctcagcagaagagactggcactggcagcc
atgcgatggaggaagactctacatggcgtctcaaacaaggagggagcttttggcggctgg
actgtaatgttgaatattgaccaggccagagaagctggattcagacgcctgctgcagtct
gggggagccaaggtgttaccagatgcttctccctcgctctttccagaaaccacacacctg
tttgtggatttcagtcggttaaagccgggtgatgtcagagtggacatcagcgaggctgca
gctcagggggtcaaatgcctaaaaccagagtatattgctgattacctcatgcaggagcca
tctccttcaatggatgcttactatcttcctggtgcagctgcagatgatctagagaaggtt
caagatacatcttcacgcaaacggaaagcatccggcgatatgtccacattgaagaagagt
cgtgtgagatga
DBGET
integrated database retrieval system
