Pimephales promelas (fathead minnow): 120476082
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Entry
120476082 CDS
T08155
Symbol
spata13
Name
(RefSeq) spermatogenesis-associated protein 13 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
120476082 (spata13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120476082 (spata13)
Membrane trafficking [BR:
pprm04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
120476082 (spata13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RhoGEF
SOS1_NGEF_PH
SH3_2
SH3_1
PH
SH3_9
Phycobilisome
Motif
Other DBs
NCBI-GeneID:
120476082
NCBI-ProteinID:
XP_039522964
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MIKQAPSSDPQGSSHNNDPQSDYFTKEQLMNPNLRSDCRVQVQPLLSEAFYEENHLNRLN
CQAQSVAEGQAKLYPSRTVRLFSTQTKCEDSRGPPVMPQAWSGLAGFRVMGSFKKLRTSV
LQGIQSRSNAMSGGQERNMSLMLEDGASFLVTKREGATNQTQEYDNMTSQTGKMSSVSDE
DDCEEENGGFQRNSHFSQSIRKAYAAGRISLLDVVKTDSPPTSEPSPSNTVESAAPCKNL
ETQENVLKRLSKSADNLHVFKSHFRRKVTSTEPQNPECTHSIILQRTSSSSSVDLQEHGT
VRNQSPMRSRWHLQKLVGSLTDLTVKRKNTPDPTPRVPLSPFSRLHDDYSRRTPCVSMSG
RQRRPLPTPSKAQQANAHEHIPTLHPAPSCPAVYSSTLDDSLEPPSKTTALVSDSVQVAV
SSTGLCSDAPVCPLEKYCEPMECHQNERNGHYSQMPKQCSSPSQKQTVNGLNANLECLWT
EERETDDLEASSDDLVRNAFLKSDAISATAASSVTNICSSESPLATPTTPNSPAFSSDSP
TSIVPRKRAGRSKPRPVSDYGHLASTKYCIPEEDRESENMDYTSQKDYNSNGSYIESNRP
ENGHLCAQTESRKRRPISVIGGVDLFSSPTAEQKDDTESLPSPVSRPPVPSHRVPPYRAV
SARLRPCVFSQSTPIGLDRMGRRKGRRLLSDGSSDAMLDDSVSEEDGSFEELTEGTPYLQ
PEVDLFTLNQYIHSGHAVYAEALWDHVTMEEQELAFKAGEVIRVLDVREQDWWWGMVGDR
EAWFPSSFVRVRVNQGDSSSDSVESVPDAEESVPSDAHKQNSEHRKQMRANVVKEIMDTE
RIYIKHLKDICEGYIRQCRKHPGMFTEAQLKTIFSNIEDIYRFQRMFLKDLEKKYNSENP
HLSEIGSCFLQQEEGFSIYSEYCNTHPVACAELQRLMKQGRYKHFFESCRLLQQMIDISI
SGFLLTPVQKICKYPLQLGELLKYTPKDHSDHEGVCAAHKAMKNVASLINEGKRRLESID
TIAHWQVAILHWAGDDVLTRSSELIHSGELTRLVRPGKTQQRSYFLFDHQLVFCKKDVLR
RDLLHYRGRMDTDLLEPIDLPDGRHAELGQLKNAFLLRHAENLNVLCVLSCKKSQDKQKW
LQAFAQERRRVQEDQEMGMEITEAQRKQAVHNARKSKQGKMKKTNYSGHPVPPHHQPLHP
LHQRHVTVPTSIPQQQVFSLAEPKKKPSHLLYSLARSALFRK
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgataaagcaggcaccttcgtcggacccgcagggatcctctcacaacaatgacccgcag
agtgactatttcacaaaggaacagctgatgaatccaaatctgaggtcagattgtagggtc
caggtgcaaccgctgctatccgaggctttctatgaggagaaccatcttaacagactgaat
tgtcaagcccagtctgttgccgaaggccaggccaagctgtacccttccaggactgtgcgt
ctgttttccacccagacaaaatgtgaggacagtagaggtccacctgtcatgccacaggct
tggtctggattggctggtttccgcgtcatgggctctttcaaaaaactgcggacttctgtg
ctccaaggaatccaaagccggagcaatgcgatgtctggcggtcaggagagaaacatgtcc
ttgatgcttgaggatggtgctagtttcttagtaaccaaacgagagggcgcgaccaatcaa
acccaggaatatgacaacatgacgtctcaaactgggaagatgtcttcggtttcagatgag
gatgattgtgaggaggaaaatggtgggtttcagaggaattcccacttctctcagagtata
cgcaaagcttatgcggcaggacggatctcattgcttgacgtagtcaagaccgacagccca
cccaccagtgagccttctcctagcaacactgtggaatctgctgcaccttgtaagaacctt
gagactcaagaaaatgttctcaaaagactaagcaaaagtgcagataatctacatgtcttc
aagagccattttagacgcaaagtcacctcaactgagccacagaacccagaatgcacccat
tctataattcttcaaaggacctccagttcctcatcggttgacttacaggaacatggtaca
gttaggaatcaaagccccatgaggtcgcgctggcatttgcaaaagcttgtcggtagttta
acagacctgactgtcaagcgtaaaaacacaccagaccccactcccagagtaccgctgtca
cctttcagtaggctacatgatgactactcccgcagaactccctgcgtatccatgagtggg
cgtcaacggaggcctttacccactcctagcaaagcccagcaggccaacgctcatgaacac
atcccaactttacaccccgctccctcctgccccgccgtttatagctccaccctagatgac
tctttggagcctcctagcaaaacaacagccctcgtaagtgactctgtccaggtggctgtg
tcctcaacaggcctttgttcagatgccccagtctgtccactggaaaaatactgtgaacct
atggagtgccatcaaaatgaaagaaatggccactactctcaaatgccaaagcagtgttca
agtccaagtcaaaagcagacagtcaatggccttaacgctaacttggagtgtttatggact
gaagagagagaaactgatgatcttgaggcttcatcagatgacctagtcagaaacgcgttt
ctcaaaagtgatgcgatctcagccactgctgcttcatctgtcacaaacatctgttcctca
gaatctccattggcaactccaacaacaccaaactctccagccttttccagtgactctccc
acttctatagtgcctaggaaaagggcagggcgctccaaaccccgtccagtgtctgactat
ggccatctggccagcacaaagtactgcatcccagaggaggacagggagtcagagaatatg
gactacacttcccaaaaggactacaatagcaatggcagctacatagagagcaacagacct
gagaatggtcatttgtgcgctcagacagagagcagaaagagacgtcccatctctgttatt
ggaggagtggatctgttttcatccccaactgctgagcagaaggacgacactgaaagtttg
ccttctccggtttctcgtccaccagtgccctctcacagagtgcctccataccgggcggtg
tctgcccgtctgagaccctgcgtcttctcccaaagcacacctatcggtctggataggatg
ggacgacgcaaagggcgccgcttgctcagtgacggcagctctgatgcaatgctcgatgac
agtgttagtgaggaggatggcagctttgaagaactgactgaaggaacaccatatctacaa
ccagaagttgatctttttactctcaatcagtacatacactcaggccatgccgtgtatgca
gaggccctgtgggatcatgtcacaatggaagagcaggagctggccttcaaagccggggag
gtgatccgggttctggatgttcgagagcaggactggtggtgggggatggtgggggaccgc
gaggcctggtttccctccagttttgtgcgggttcgagtgaatcagggggattcgagcagt
gacagcgtggagagcgttccagatgcggaagagtcggtcccatcagacgcacacaaacaa
aactcagagcacaggaagcagatgagagctaatgtggtcaaagagatcatggacacagag
cgcatttacataaaacatctcaaagatatctgcgagggatatatccgtcaatgcaggaaa
caccctggcatgtttactgaagcacagctaaagacaatcttcagcaacatcgaggacatc
tacaggttccagagaatgtttctcaaggacctagaaaagaaatacaacagtgaaaatcct
catctaagtgagattggctcctgcttccttcaacaggaggaaggtttctccatatactct
gagtactgtaacacgcatcctgtggcgtgtgccgaattacagcgattgatgaaacaaggg
agatataaacacttctttgaatcctgtcgtctcctacagcagatgatcgacatctctatt
tctggcttcttactcacacctgtacagaagatttgtaaataccctcttcagctgggagag
cttttgaaatacacacccaaagaccacagtgaccacgaaggggtgtgtgccgcacataaa
gcaatgaagaacgtggcaagtttgataaatgagggaaaaaggagacttgagagcatcgac
accatcgctcactggcaggtggccatcctccactgggcgggtgatgatgtgttaacgcga
agctccgagctcatccactccggcgagctcacgcggctagtacgacccggtaagacgcag
caacgcagctacttcctgtttgaccaccagctggtgttctgtaagaaagacgtcctgcgg
agagacctgctacactaccgtggccgtatggacacagacctactcgagccgatcgacctg
cctgatggacggcacgctgagctgggccagctgaagaacgcgtttctgctacggcatgcg
gagaacctgaacgtgctgtgtgtgctgagctgcaagaagagccaggacaagcagaaatgg
ctccaagcgtttgctcaagagcgcagacgggtacaggaagaccaagagatggggatggag
atcactgaggcccagaggaagcaagcagttcacaacgccaggaaatctaaacaaggcaaa
atgaaaaaaacgaattattctggtcatcctgttcctccccaccatcagcccctacatcct
ctccatcagcgacatgtgaccgtgccaaccagcatcccccagcagcaggtcttctcttta
gcagagcctaagaagaaaccctctcatctgttgtactcacttgcacgcagtgccctcttc
aggaaatga
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integrated database retrieval system
