Pimephales promelas (fathead minnow): 120476364
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Entry
120476364 CDS
T08155
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120476364 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
120476364 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120476364 (lsm4)
03041 Spliceosome [BR:
pprm03041
]
120476364 (lsm4)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120476364 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
120476364 (lsm4)
Spliceosome [BR:
pprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120476364 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
120476364
NCBI-ProteinID:
XP_039523276
LinkDB
All DBs
Position
Unknown
AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVQSKGRGRGGMQQNKPQGKGRGGGPGRGGGTGRGVFGG
RGRGMPGTGRGQQQDKKPGKPQGVKNPN
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgttatctttactgaagaccgcacagaaccacccgatgctggtggagttaaag
aatggtgagacgtacaatggccatctggtcagctgtgacaactggatgaacatcaacttg
agagaagttatttgcacttcaagggatggagataaattttggaggatgccggaatgctac
atcagaggaagcaccatcaaatacttacgaatccctgatgagatcatagatatggtgaaa
gaggaagtacagtcgaagggacgtggccggggaggtatgcagcagaacaagccacaggga
aaaggcaggggaggtggacctggaagaggtggtggaaccggccgaggtgttttcggtggt
cgtgggagaggcatgccgggaactggtcgtggacagcaacaagacaaaaagcctggcaaa
ccacaaggtgtcaaaaacccaaactaa
DBGET
integrated database retrieval system
