Pimephales promelas (fathead minnow): 120476400
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Entry
120476400 CDS
T08155
Symbol
ushbp1
Name
(RefSeq) colorectal mutant cancer protein isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pprm03037
]
120476400 (ushbp1)
Cilium and associated proteins [BR:
pprm03037
]
Primary cilia and associated proteins
USH complex and associated proteins
120476400 (ushbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
DUF2089
Motif
Other DBs
NCBI-GeneID:
120476400
NCBI-ProteinID:
XP_039523321
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
MTQQRSDSLESADSELAQCETEVSTLLQIISELNRKMDCLQIPRVCVLREMKPPEGHVCV
DGCVPQQGLRSSACSLTAADAGKVSVETKTKNICRDSEGGSSDLWNDLQKVLSALETSSG
HGRKMLRLQTQNSEIVQAHHLSAARESWVKATQVLEEMESDLGISYPSALPPDERRQYQR
DVLSLYKHNQDLNTSLKSHQEELIEAESLLIDLEDEKKWLMEKLVDLKRKWLYGVSRSPP
VSPSLSSSRTSSPSFSSPPYPGSPLLSRKLPGSRPDSPSSPCTVDSVLQAEIEKLQRCLE
RLKARNERLNGALVRRKGESEQLSMSLSRQEADSSALHMALAYCEECEEAYSDLLSLYEA
RKQQNAEQISTPQSDFSEVNTDKGEPSSSPLESSAENRTNSLSGQEFEGQAGVILQRIAR
LKQDRAAMCIPQRVKAGEGKISPDTGTLTGTRGRTSSLSKNTKEEKAVLLYELVTVREEM
SEMRGNLRLLEKERRCLDLALMVQSAQDSAGALILDSLRDELEERRATQQRIADNLANIE
VEGEIPGPRNRSILRELQAALQREQSLKKRVAALRESLDSAVTDSTTQRRVNREENARLS
RYYNKISSTYRSSRKKHQEQLWRLEKQMAVMNERHAAKEAELSATLEAMKSTREETIL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgacacagcagagatcggacagtctggagtcagcggactccgagctggcacagtgtgag
acggaggtgagcactttactgcagatcatttctgagctcaacaggaagatggactgccta
caaataccacgggtctgtgttctcagagagatgaaacctcctgagggtcacgtgtgtgtc
gatgggtgcgtcccgcagcagggcttgagatcttcagcctgcagcctcacagcggcggac
gctggcaaagtatctgtggagaccaagaccaagaacatctgcagggactcagaagggggc
agcagtgatctttggaacgatctacagaaggtcctctctgctctcgagacctctagcggt
catgggaggaagatgctcaggcttcaaacgcagaattcggagatagttcaagcacaccat
ctctctgcagcccgggagagctgggtgaaggccacacaggtgctggaggagatggagagc
gatttggggatctcatacccctctgctcttccccctgatgagagacgtcagtatcagcgg
gatgttctctcactgtacaaacacaaccaagacctcaacacctctttgaagagccatcag
gaagagcttatagaagccgaaagtttgttgattgatcttgaggacgagaaaaagtggctg
atggaaaagttagtggacctgaagaggaagtggctgtacggagtgagtcgttctcctcct
gttagtccatcattgtcctctagtcgaacttcgagcccttccttttcctctcctccatat
cctggatcccctctgctgtcccgcaaactgcctggctccaggccggactccccttcatct
ccctgcaccgttgattctgtgcttcaggccgagatagaaaagctgcagaggtgcctggag
cgactgaaagctcggaatgagcgcctgaatggcgcactggtcaggaggaaaggagaatca
gagcagctgagcatgagtcttagccgacaggaggcagacagctcggctctacacatggct
ctcgcatactgtgaggagtgtgaggaggcttacagtgatctactatccctgtacgaagcc
agaaaacaacagaacgcagaacaaataagcacaccgcagtctgacttctcagaagtgaac
acggacaaaggcgagccatcctccagtccactagagagcagcgctgagaacagaacaaac
agcttatcgggacaggagtttgagggccaggctggtgtaattctccagaggatcgccagg
ctgaaacaggacagggccgcaatgtgtatcccgcagcgggtcaaagcaggagagggcaag
atcagtcctgacactggcacgcttacagggaccagaggtcgcaccagttcactttccaaa
aacactaaagaagagaaagcggttctactgtatgagctggtgacagtcagggaggagatg
tcagagatgcgtgggaatcttcggcttctggaaaaagagagacggtgtttggacctggcg
ctgatggtccagagtgcccaagattctgctggcgctctgatcctggacagtctgcgggat
gagttggaggagaggagagccacccagcagagaattgctgacaacctggcaaatatagaa
gttgaaggggaaattcctggtcctcgcaatcgctctatcctaagagaactgcaagcagct
ctgcaaagggagcaatcactgaagaagagagtggcagctttacgtgagtcgctggactca
gcggtcacagacagcaccactcagaggagggtcaacagagaagagaatgcacgtctctcc
cgctactacaataaaatctcaagcacttacagaagttctcggaaaaagcaccaggagcag
ctgtggcgtctggagaagcaaatggcagtaatgaacgaacgtcacgctgccaaggaggct
gagctaagtgccacactggaagctatgaagtcgacgagagaggagaccatactctaa
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