Pimephales promelas (fathead minnow): 120476533
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Entry
120476533 CDS
T08155
Symbol
lum
Name
(RefSeq) lumican
KO
K08122
lumican
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pprm00535
]
120476533 (lum)
Proteoglycans [BR:
pprm00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
120476533 (lum)
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_6
LRRNT
LRR_14
LRR_LRWD1
LRR_9
LRR_EndoS
DUF7409
Motif
Other DBs
NCBI-GeneID:
120476533
NCBI-ProteinID:
XP_039523530
LinkDB
All DBs
Position
Unknown
AA seq
344 aa
AA seq
DB search
MFALGSFLLAGLICQSLGQYDYEDEYYIPYAPLEGASTANCAQECECPPSFPTAMYCNDR
SLKFIPIVPTGIKYLYLQNNFIEEIKAGVFDNVTDLRWLVLDNNIITSEKIQAGTIDKLG
SLEKLLFSHNKLTKPPGLRTKSLDELKLVANQLNSFPATTLSGMEHLTTLHLSKNKLTTE
SLTGAFKGLKSLLLLDVSENMLKKLPSGVPASLLMLYADNNDIDSVPGGYLAKLPLLQYL
RVSHNKLVDSGIPAGVFNVSSLLELDLSFNKLKTIPEINESLEHLYLQVNEISKFDLTNI
CKFSSPVNYSRLRTLRLDGNNITHSSMPDDTANCLRQASEIIFE
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctctcggctcgttcttattggctggactgatatgtcagagtttgggtcagtat
gattacgaagacgaatactacataccatacgcaccattggagggagcatcaactgccaat
tgtgcccaggagtgcgaatgcccccccagcttccccacagcaatgtactgcaacgaccgc
agcttgaagttcattcccattgtgccaacaggaatcaaatacctctacctacagaacaac
ttcattgaggagatcaaggctggcgtgttcgataacgtcaccgaccttcgctggcttgtc
ctcgacaacaacatcatcaccagcgaaaagatccaggctggtaccattgataaactgggc
agcttggagaagctcctcttcagtcataacaagctgaccaaaccccctggtcttcgtacg
aagtctctggatgagttgaagctggttgccaaccagctaaactcgttccctgctaccacc
ttgtccgggatggaacacctgaccacccttcacctgtccaagaacaagctgactaccgag
agcctcaccggtgccttcaaaggcctcaagtcactccttttgctggacgtgagcgagaac
atgctcaagaaacttccctcgggagttccagcctcgcttttgatgctctacgccgacaat
aacgacatcgacagcgtccctggtggctacctggccaagctgccgctcctgcagtatctg
cgcgtctcccacaacaagctggtggactctggaatccctgcaggtgtgttcaacgtgtcc
tctctccttgagctcgacctgtctttcaacaagctgaagaccattccagagatcaacgaa
tcgctcgagcacctgtacctgcaagtcaacgagataagcaagtttgacctgacgaatatc
tgcaagttcagctccccggtcaactactcgagactgaggaccctgcgcttggatggaaac
aacatcacacacagcagtatgccggatgacacggctaactgcctacgccaggcctcagag
atcatctttgaatag
DBGET
integrated database retrieval system
