Pimephales promelas (fathead minnow): 120476641
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Entry
120476641 CDS
T08155
Symbol
apex1
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120476641 (apex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120476641 (apex1)
Enzymes [BR:
pprm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
120476641 (apex1)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
120476641 (apex1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
120476641
NCBI-ProteinID:
XP_039523739
LinkDB
All DBs
Position
Unknown
AA seq
310 aa
AA seq
DB search
MPKRAKKNEEAVDGETGNGTAPAKKEKKGKEPEVPILYEDPPDKMTSKDDRAANMKITSW
NVDGLRAWVKKNGLDWVRKEDPDVLCLQETKCAEKALPSEITEMPEYPHKYWAGSEDKEG
YSGVAMLCKTEPLSVTYGIGKEEHDKEGRVITAEFPSFFLVTAYVPNASRGLVRLDYRKT
WDVDFRAYLVSLDQRKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAG
FTDSFRELYPEQANAYTFWTYMMNSRAKNVGWRLDYFVLSAALLPGLCDSKIRNTAMGSD
HCPITLYLAV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaagagccaagaagaacgaggaagctgtggatggggagactggcaatggaact
gcacctgcaaagaaagagaaaaaggggaaagagccagaggtcccaattctgtatgaagat
cctccagacaagatgaccagtaaagatgaccgtgcagccaacatgaaaatcacctcctgg
aatgtggatggtctgcgggcatgggtcaaaaagaatggccttgattgggtacgtaaggag
gacccagacgtgctgtgtctgcaggaaaccaagtgtgctgagaaagccctaccttctgag
atcactgaaatgcctgagtatccacacaagtattgggctggatcagaggataaagagggt
tacagtggagtggccatgctctgcaagactgaacccctcagtgtcacctatggtattggt
aaagaggaacatgataaagagggccgagttatcactgctgagtttccatctttcttcctg
gtcacggcgtatgtgcccaatgccagccgtggtttggtgcgtctggactaccgcaagacc
tgggacgtggatttccgggcttaccttgtcagcttggaccagcgaaagcccctggtgctg
tgtggcgatctgaatgtggcccaccaagagatcgatcttaaaaaccccaagggtaaccgc
aagaatgcaggcttcacccccgaggagcgtgagggcttcactcagcttcttgaggccggt
ttcaccgacagtttccgggaactgtatccggagcaagccaatgcctacaccttctggacc
tacatgatgaactctcgagccaaaaacgtcggctggcgtttggactactttgtgttgtcg
gctgcattgcttccgggtctgtgtgacagcaagatccgaaacacggccatgggaagtgac
cactgtcctattaccctgtatttggctgtgtag
DBGET
integrated database retrieval system
