Pimephales promelas (fathead minnow): 120476805
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Entry
120476805 CDS
T08155
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120476805 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120476805 (tgfbrap1)
Membrane trafficking [BR:
pprm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120476805 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
DcpS
Motif
Other DBs
NCBI-GeneID:
120476805
NCBI-ProteinID:
XP_039523926
LinkDB
All DBs
Position
Unknown
AA seq
866 aa
AA seq
DB search
MSVKAFELVPAVEREQVMGEKVRINIECIECCGQHLYLGTNDCFIHHFILEEHTTATGKL
AYKAQKLLHKYLGLKKPVAELKAASALERLIVLCDSTITVVDMVTLELVPFGGTKLKGVT
AFCINENPVTGDAFCVEMAVVLARRRAVQICMVHEDRVHMLKEVTTPEQPCALSLDGYNI
CLALSTQYMILNYSTGASQDLFPYDCEERKPIVKRIGREEFLLAGPGGLGMFANAEGISQ
RAPVSWSESVMAAAVCFPYVVALDESFVTVHSMLDQQLKQTLSFRDGHLLQDFEGKVVLA
SSKAVYMLVPLPLERQIQDLLASHRVEEALTLTEAAQRNIPKEKYQILHKRILQQAGFIQ
FGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLTQGDQEK
VQHFKRFLISYLHEVRSSDSANGFREDVDTALLKLYAETGHESLLDLLASDNACLLADSA
PWLEKHHKYYALGLLYHYNDQDSAALQMWVKIVNGDLQDSTRPDLFEYVVDFLSFCSNLD
LVWRHAEWALQKDQKIGVQIFTKRPTSEEKMGQLNPNDVIAYLEKHSQALLLYLEHLVLE
KKLQKEKYHTHLAVLYADKVLGLISRPSANEEQLSAARQKLQRLLKESNLCRVQLLLGKI
QNSDLLLLERATLHGKLEEHDKALHILVHQLKDSPAAEEYCSWASASQDRSYRQKLFHQL
LSVYLDPDLPGGAQTIAAVDLLNRHAEEFDAVHVLKLLPEEWSLPLLRPFLCGALRASVH
ARCTSQVAVGLARAQNLQLQHDRLKYRGGPILVSEKKGCQLCHNTFSEPDCACLPGGTPV
HIHCVAKKALDLPKRHHENAHHSNHT
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgaaagcttttgagctggttcccgctgtggagcgggagcaggtgatgggcgaa
aaagtgcggataaacatcgaatgcattgagtgctgtggccaacatctgtacctgggcacc
aacgactgcttcatccatcacttcatactagaggagcacacgacagccacaggtaagctg
gcctacaaagcccagaaactcctccacaaatacctgggcctgaagaagccagtagcagaa
ctgaaggccgcctctgctttggaacgtctaatcgtcctctgtgattcaaccatcactgtt
gtggacatggttactctggagcttgtcccctttggtggcactaagctcaaaggtgtgact
gcgttttgtatcaacgaaaatccggtcacaggggatgcgttctgtgtggaaatggcggtg
gttttggcacgcagaagggcagtccagatatgtatggtccatgaggacagagtgcacatg
ttaaaggaagtgaccactccagaacagccttgtgccctgagcctggatgggtacaatatc
tgtcttgccttgtccacacagtatatgattctgaactacagcacaggagcctctcaggat
ctgttcccttatgattgtgaagaaaggaaacccattgttaagaggatcggccgggaagag
tttcttttggcgggcccaggcgggcttgggatgtttgctaatgcagaaggcatatctcag
cgtgctccggtgagctggtccgagagcgtgatggcggcggctgtgtgttttccgtatgtg
gtcgcgctggatgaaagctttgtgaccgttcacagcatgttggaccagcagctcaaacag
acactgtcattcagagatggacaccttctgcaggattttgaaggtaaggtggtgttggcc
tcatcaaaagcggtgtatatgctggtgcctctccctctggagcgtcagatccaagacctg
ttggcaagccatcgagtcgaggaagccctgaccctcaccgaggccgcacagagaaacatt
cccaaagagaaatatcagatattgcacaaaagaattctccaacaagcaggattcattcaa
ttcggccagcttcagtttttagaagcgaaagagcattttaggaagggacagctggatgta
cgggagctgatctctctatatccgctgctcctgcccgcctcttcttctttcacacgttgc
catccaccacttcatgaatttgctgacctgaaccacctgacccagggggaccaagagaag
gtacagcacttcaaacgtttcctcatcagctacctacacgaggtgcgcagcagcgacagc
gctaatggtttccgtgaagacgtagatacggcgttgctaaagctgtacgcagagaccggc
cacgagagtcttctggatttgctggcttctgataatgcctgtcttctggcagacagcgcc
ccctggctggagaagcatcacaagtattatgctcttggacttctatatcactacaatgat
caggattctgctgctttacagatgtgggttaagattgtcaatggagatctccaagactca
acacgaccagatctgtttgaatatgttgtggattttcttagtttctgctccaaccttgac
cttgtgtggcggcatgcagaatgggcactacagaaagatcaaaagattggtgtgcaaatc
ttcaccaaaaggcctacctcggaggagaagatggggcagttaaacccaaatgatgtgatt
gcgtatttggagaaacacagtcaggcccttctgctttacctggaacacctggtgctagag
aagaaattgcagaaagagaagtatcacacgcatctcgccgtgctgtatgccgacaaagtc
ctgggcttgatatcacgaccatcagccaatgaggaacaactgtctgctgcccgccagaaa
ctacaacggttattgaaagagtccaatctctgcagagtccagttactactaggtaaaatc
cagaactccgatctgctgctacttgagcgagctacacttcacggaaagttagaagaacat
gacaaggctttgcacattctagtgcaccagctgaaagactctcctgcggctgaggaatac
tgctcttgggcctctgcatctcaggaccgctcctaccgtcagaagcttttccaccaactc
ttgagcgtttacttggacccggatttaccgggaggggcacaaacaatagcagcggtcgac
ctgcttaaccgacatgctgaagagtttgacgcagtgcatgtgttaaagctccttccagag
gaatggtctctaccgttactccgtcctttcctgtgtggtgcgctgagggctagtgtacat
gcacgctgcacttcccaggttgcagtggggctggcccgggcacaaaacctccagcttcag
catgataggctgaagtatcgaggcggcccaatattagtgtctgaaaagaagggatgccag
ctgtgccacaacaccttcagcgagccagactgcgcctgcttgcctggcggaacgccggtc
cacattcactgtgtcgccaagaaagccctggacttgccaaagcgccatcatgaaaatgcc
caccacagcaatcacacatga
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