Pimephales promelas (fathead minnow): 120477291
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Entry
120477291 CDS
T08155
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04382
Cornified envelope formation
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04518
Integrin signaling
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120477291 (col4a6)
04518 Integrin signaling
120477291 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120477291 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120477291 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120477291 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120477291 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120477291 (col4a6)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120477291 (col4a6)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120477291 (col4a6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120477291
NCBI-ProteinID:
XP_039524749
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MKLWSFVLPVVLYAVSAQAGSNLQEPCAGRDCRGACPCLPLKGSRGRPGEHGNLGISGPE
GFIGGPGPVGPKGEKGHVGRKGPPGLNGDKGPMGVPGFSGNDGVPGHPGQLGPQGPPGLD
GCNGTRGDTGDRARDGFPGNPGVPGYAGQKGQKGEPYYITIPRPQFFTDGPPGPAGLAGP
MGPQGPDGYPGLPGPPGPPGPPGSRGQGYKGEPGEKGEVGLPGPRGNPAVQFNAPAISTI
NKGEKGEKGFAGNPGFPGTPGPPGPGGFRGETGEKGILGLPGSRGAPGLNGPPGLLGRKG
FIGDSGFTGQPGFTGPKGDRGDPGPPGPIFGPADGIKGPQGDPGFPGYPGLTGDTGFPGF
PGQPGPPGAPGFNTGRPGNPGFPGSRGPKGQRGNPGRDSYGAEGRPGNQGLSGVPGLPGP
PGSSLNSLSPAITGFPGRPGPRGPAGERGYEGFKGENGDCNCLGGGTTGAQGRQGPPGPS
GPRGVNGVKGEFGDQGFPGSRGPQGLDGRVGDRGFDGRKGEKGNSFFPQGRGQKGDLGQQ
GLSGPPGATGNPGRDGSPGFPGKPGPPGDSGFGVTGDKGFPGIPGSKGRPGSSGDPGIGY
PGVAGIKGSQGDPGFNGLPGTPGLPGSPGDSCGQAGLNDASLEQGGTPLPCRIPGEQGDP
GFSGRPGVPGSKGQPGSPGASGRPGFDGPKGERGDPGSGGQPGPQGFPGIRGDAGLPGTT
NTGLPGSPGRNGFPGVPGAKGEPGVVLGASPGGPGFPGRPGEPGDKGPPGTPGLPGRPGN
DGRSGFPGVKGERGLDGNPGPVGPIGPPGEIPPGGIPGPRGPAGAKGFNGPPGCQGFPGL
KGVRGDPGFPGPGGIKGIPGIPGILGQPGIRGPPGPLGIGARPGIPGRPGIKGVKGSFGV
SGFQGLPGSSGVPGGPGVKGLPGFTGQDGFPGEIGSTGPKGDRGESGLPGPPSPVLPAEL
LENGEIGDPGANGLPGFPGPRGDKGFSGRPGREGFPGSPGVANQVKGFPGQPGNPGIPGS
PGFPGSKGSPGVMGFPGTTGLRGDDGFPGVQGFPGTAGQPGGKGEKGDSYTSSGPPGPKG
AVGNPGFPGGPGFPGEPGDSGFPGVVGFQGQKGLPGEPGAPGFAGSPGLAGIRGLPGYPG
LKGRDGDAGRPGTPGSPGEKGFPGSPGLDGLNGLPGSKGPRGVPGVIEGGRPGAPGVNGR
KGERGTSQPGGPGRPGEKGIKGDTGPSGFRGYPGNPGPPGPPSPSNIPGPPGDPGLPGLD
GREGPFGPPGLPGPPGPGTVQGDRGNPGFQGRPGIPGPRGDPGTFGAPGLPGNPGFKGQR
GDPGFNGVPGQPGFPGDPGNNGRDGPNGLSGESGAKGEPGSVFYPPNRNQIIFGDPGPPG
LDGFLGLVGIPGLPGTPGFPGPKGLRGPVGRPGPVGPAGSPGTLGDSGTPGTQGPTGYQG
PPGKPGLPGLPAQPVRSSGIGYTLVKHSQSSQMPMCPQGMTKLWDGFSLLYVEGQEKSHN
QDLGLPGSCLPHFSTIPFLYCTVNEICHYASRNDKSYWLSTSAPIPMMPVEDQQISQYIS
RCSVCEAPSQAIAVHSQDLSIPTCPQGWRSLWIGYSFLMHTAAGAGGGGQSLVSPGSCLE
DFRSTPFIECNGARGTCHYFVNKYSFWLTTVEQSTQFVQGPTQETLKGDLYRSRISRCQV
CMKIL
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttggagttttgtgttacctgttgttttgtatgcagtgtctgcacaagcggga
tcaaatttgcaggagccctgtgcgggccgggactgcagaggagcgtgtccatgtttgccc
ttaaagggtagcagggggcgaccgggggaacatgggaacctgggcatcagtggtcctgag
ggtttcattgggggcccggggccagttgggcccaaaggagaaaagggccatgtaggacgc
aaagggccgcctggactaaatggagataagggcccaatgggtgttcctgggttttctgga
aatgatggtgttcctggacaccctggtcaactggggccccagggacccccaggtctcgac
ggctgtaacggtacacgaggggacacaggtgacagagcccgtgatggttttcctggtaat
cctggagttcctggatacgctggtcaaaaaggtcaaaaaggagaaccgtattatataact
attccaagaccacaatttttcaccgacggccctccaggtccagcaggacttgcaggtcca
atgggtccccaaggtccagatggatatcctggtctacctggtccacctggtcctcctgga
cctccaggaagtcgaggtcaaggatacaaaggggagccaggagaaaagggggaagttggt
ctaccgggacccaggggcaatccggccgttcagtttaacgcaccagcaataagcactatc
aacaaaggagagaagggtgagaaaggctttgccggtaatccaggttttcctgggacacca
ggaccaccaggccccggtggttttagaggtgagactggcgaaaagggaatcctgggcttg
ccaggctcgaggggtgcacctggtctgaatggtcctcctgggctcctaggaagaaaaggc
ttcattggggattcaggttttacaggccaaccaggctttactggcccaaaaggtgacaga
ggagacccaggtccacctggaccgatttttggaccagcagatggaattaaaggtcctcaa
ggggatcccggctttcctggttatccggggctaactggagatacaggttttccaggtttt
cctggtcagcctggtcctcctggtgcgcctggttttaacacaggtcgtcctggcaaccct
gggttccctggtagtcgtggacccaaaggacagaggggaaacccaggtcgggattcttat
ggagctgaaggtcgtcctggaaatcagggcctttctggagttcctggtctccctggacca
ccgggaagttcattaaactcgctctctcccgcaataactggttttcccgggcggcctggt
ccaagaggacctgctggagaaagaggctatgaagggtttaaaggtgaaaatggtgactgc
aactgtttgggtggaggaacgacgggtgcacagggacgtcaagggcctccagggccctca
ggtccccgtggagttaatggtgtgaagggagaatttggtgaccaaggtttcccaggatcc
cgtggaccacagggtcttgatggtcgtgtgggggacagaggctttgatgggcgtaaagga
gagaaaggtaattctttctttccccaaggtagaggacaaaaaggtgatttgggtcaacag
ggtctttctgggccacctggagcaaccggcaaccccggaagggatggatctcctggcttc
cctggaaaaccaggtccacctggggactctggttttggggtgactggagataaaggtttt
cctggtatcccaggatccaaaggtcggcctggttccagtggcgatcctggtattggctat
cctggtgtagctgggatcaaagggtcacaaggtgatcctggattcaatggtcttcctgga
acacctggacttccaggttctccaggtgacagctgtgggcaggcggggcttaatgatgcc
tctttggaacagggaggaacaccactgccctgtaggattcctggtgaacaaggagaccca
ggattctccggacgtcctggggtgccagggtcaaagggtcagcctggttccccaggagca
agtgggcgcccagggtttgatgggcctaaaggtgagagaggagatccaggttctggaggt
caaccaggacctcagggtttcccgggaatcagaggagatgcaggtttaccaggaacaaca
aatactggcttaccaggatctccaggaagaaatggttttccgggtgtgccaggagctaag
ggagaacctggtgtggtgcttggggccagccctggaggtccaggatttccagggagacca
ggagagccaggagacaagggtccgcctgggacacctggtttacctgggaggcctggtaat
gatggacgcagtggttttcctggtgtaaagggtgagcgaggtttggatggaaatcctggt
ccagtaggtcccataggtccaccaggagaaatccctcccgggggtatccctggtcccaga
ggtccagctggagctaaaggatttaatggacctccaggctgccaaggtttccctgggctg
aagggtgtgagaggagatccggggtttccagggcctggtggaataaagggtataccagga
attcctggtatcctagggcaaccgggaattaggggacctcctggaccccttggcattgga
gcacgtccaggcataccaggaagaccaggaataaagggggtgaaggggtcttttggggtg
tcggggttccaaggattacctggttcttctggagtcccaggtgggccaggtgttaaaggt
ttacctggtttcactgggcaggatggctttcctggggaaattggatcaacaggacccaaa
ggggatcgtggtgagtctggtcttccaggtcccccttctcctgtgttgccagcagagctg
ctggaaaatggtgaaataggtgacccaggagctaatggactgcctggtttcccaggacca
agaggtgacaagggtttttcagggcgacctggacgtgaaggctttcctggatcacctggt
gttgcaaaccaagtaaaaggttttcctggccagcctggaaacccaggtattccaggttcc
ccaggcttccctgggtctaaaggttctcctggagttatgggcttccctggcacaacaggc
ctgaggggtgatgatggttttcctggggttcaagggttcccgggcactgcaggacaacct
ggtggcaaaggtgagaaaggtgactcgtatacatcatctggaccccctggaccaaagggt
gcggttggaaatcctggattcccaggtggtccaggatttcctggtgaaccaggtgattca
ggtttcccaggagtcgtaggatttcaaggccagaaaggattacctggagagccaggagca
ccaggattcgctggatcaccaggcctcgcaggcattagggggcttcctggttatccagga
ctaaaggggcgtgatggagatgcaggccgtcctggaactccaggctcaccaggagaaaaa
ggttttccaggctcacctggcttagatggactcaatggtcttccaggatccaaggggcca
cgtggagttccaggcgtgattgaaggtggtcggcctggagctcctggtgtgaatggccgg
aagggagagagaggcacatcacaaccgggtggacctggtcgccctggagagaaaggaatc
aaaggagacactggtccttctggttttagaggctaccctggtaatcctggcccccctggg
ccacccagtccttctaatatcccaggtcctcctggagaccctggacttccgggattagat
ggacgagaaggtccctttggccctcctggcctgcctggaccaccaggccctggaacagtc
caaggagacagaggaaatcctggatttcaagggcgaccaggaataccaggaccacgtgga
gaccctggtacttttggagcccctggattaccaggcaaccctggttttaaagggcaaaga
ggtgaccctggctttaatggtgtacctggacaaccagggttcccgggagatccaggaaat
aatggcagagatggacccaacggattaagtggcgagtctggtgctaagggagaaccaggt
tctgttttttacccacctaatagaaaccaaataatatttggggatccaggcccaccaggt
cttgatgggtttttgggtctggtgggaataccaggcctgccaggcactccagggttccca
ggtcctaagggcctcagagggccagtgggtagacccggtccagttggtccagctggatct
ccaggaactcttggagactctggaactccaggaacccaaggacccactggataccaagga
ccccccggcaagccagggttgccaggtcttcctgctcaaccggtgcgcagtagtggtatt
ggttatactttggtgaaacacagtcaatccagccagatgcccatgtgtcctcagggcatg
accaagctatgggatggattcagtttgctgtatgttgaggggcaggagaaatcacacaac
caggacctgggattgcccggctcatgtctgccacatttcagcaccatccccttcctgtac
tgcacagtcaatgaaatctgccactacgctagccggaatgacaaatcctattggctgtcg
acctctgcgcccattcccatgatgcctgtggaagatcagcagatatctcagtacattagc
cgctgctcagtgtgtgaggctccatctcaagcaatcgctgtccacagccaagatctcagc
ataccgacctgccctcagggctggagaagtctgtggattggttactccttccttatgcac
acggccgcaggtgcaggaggaggcggtcagtcattggtgtctcccggttcttgtcttgag
gatttccgctccactcccttcatcgagtgcaatggtgcccgcggaacctgccactacttt
gtcaacaagtacagtttctggttgaccacggtagagcagagcacacagttcgtccagggt
cctacccaggagacgctgaagggagatctgtaccgctcacgcatcagtcgctgtcaagtc
tgcatgaagattttgtag
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integrated database retrieval system
