Pimephales promelas (fathead minnow): 120477611
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Entry
120477611 CDS
T08155
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120477611
00535 Proteoglycans [BR:
pprm00535
]
120477611
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120477611
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120477611
Proteoglycans [BR:
pprm00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120477611
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120477611
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
120477611
NCBI-ProteinID:
XP_039525194
LinkDB
All DBs
Position
Unknown
AA seq
1362 aa
AA seq
DB search
MSELRFWLCLYIVVCLSIHHTHGWFWNDNSNTKGTQTPAYLTTIRPTSQPRTEQTRKAEE
SGVSLLQLIGDPPPDGVSKVFDNDNGPSYVFGPNSNVGQSAAAHLPNPFYRDFSLIFNIM
PISTKPGVIFSISDPTQNIMYVGVKLSAVERGKQNIIFYYTEPDSQSSYEAARFSVPSMM
NTWTRFSISVLNEQVSLYFKCDSDPQVINFERSPDDMDLDAGAGVFVGHASGADSDKFLG
RIGDLRVVRDPGAAERHCEEDEDDFDANLQGSGDYGASGDGDRPPSVQLTPPSSRPIQQP
PVTSSEKQQTGYVGARGEKGERGEKGSKGDRGLTGPKGDSGTVSGGSAKGDKGTVGEKGM
KGNAGFGYPGSKGDRGPAGPPGPPGPPGPSAEVEVRGDGSVVQKVTGPRGPPGPPGPAGP
AGNDGEPGDPGEDGKAGQVGPPGFPGTPGIKGDKGDRGESQPGPRGPPGPPGPPGPISRS
DRPTFVDMEGSGFDMDSVRAMPGLPGLPGPPGPPGPPGLPSSGSGGFGPPGPPGQNGAPG
QPGLPGPPGTDGKPGSPGPIGEKGDAGELGLPGPVGEKGATGPAGSPGLPGQGGLAGLPG
PMGPVGPPGPPGPPGPRYHVGFDDMEGSGIHFSSVPGVRGPVGIQGPPGIPGPQGIPGYP
GVKGSEGLQGQDGRPGLDGFPGPQGPKGDRGDRGERGEPGRDGTSFPGPPGPPGQPGQII
YRYAENYDETGGVGPQGGSGVPGQAGFPGPMGPKGDRGEPGLPGYAIKGEKGEPGLILGP
DGNPLYLGGLVGQKGEKGNFGPVGPPGPAGPAGLKGEFGMPGRPGRPGVNGYKGEKGEPS
SGSGYGYPGPPGPPGPPGPPGPAVPLDRFGRYEDYSRQYPATKGDKGDQGAPGIPGSPGF
SSNLDIYALKNEMKGERGDSGLKGEKGEPGGGFYDPRFGAGQGPPGNPGLPGPKGDSIRG
PPGPQGPPGPPGVGYDGRPGNPGPPGPPGPPGSPSLPGAYRPPLSIPGPPGPPGSPGIPG
TGSGQVTVMRSYDIMFATARRQTEGALIYILDRSDLYLRVRDGVRQVMLGDYKPFYGELD
NEVAAVQPPPVVHYSQDHTANNGAEQISPPHQPIEFPRSEPENRNPNPPDSRYPDPRYPP
YTDNRYNPVQPEIRYPVQPGRNPITPARRPSPPVNQPEGHTHTSGPGLHLIALNSPQVGN
MRGIRGADFLCFQQARAVGMKGTFRAFLSSKLQDLYSIVRKSDRDTLPIVNLKDQVLFRS
WESLFSDSESRMKDNAPMYSFDGRDVLRDSAWPEKMIWHGSSGRGHRQTDNYCETWRAGD
RAVTGLASSLQAGQLLQQTSSSCSSSFIVLCIENSYMAQSKK
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagctgaggttttggctgtgcctctatattgtggtgtgcttgagcatacaccac
acacatggctggttctggaatgataactcgaatacgaagggcacgcagacacccgcctac
ctgacaaccataaggcccacatcccaaccgaggacagaacagaccaggaaagcagaagaa
agtggagtgtcactgttacagttaattggcgatcctccacctgatggcgtctccaaagtc
tttgataatgataacggcccgagctatgtgttcggcccgaactccaatgtgggacagtca
gctgcggcccacctgcccaaccctttctaccgtgacttctccctcatcttcaacataatg
cccatatccaccaagcctggcgtcatcttctccatcagtgacccaacccagaacatcatg
tatgttggtgtgaagctgtcggcagtggagaggggcaagcagaacattatcttctactac
actgagcctgactcgcagagttcatacgaggcggccagattctccgtgccctccatgatg
aacacctggacccggttttccatcagtgttttgaatgagcaggtttccctctacttcaaa
tgtgactcagatcctcaagtcatcaatttcgagcgatccccggatgatatggacctggat
gccggggccggagtgtttgttggccatgccagtggagcagactccgataagtttttgggt
cgtattggtgatctgagggtggtgagagaccctggggcggctgagcggcactgtgaagag
gatgaggatgactttgatgcgaatctgcagggatcaggtgattatggagcaagtggagat
ggagacagaccaccatcagtccagctgacacctccctcctctcggccgatccagcagcca
ccggtgaccagcagtgagaagcagcagacaggttatgttggtgcaagaggagagaaagga
gaaagaggagagaagggttccaaaggtgacaggggccttacggggccaaagggcgattca
ggaactgtgtctggtggcagtgcaaaaggagacaagggtaccgtaggagagaaaggaatg
aagggcaatgctggttttggttatcctggatcaaagggtgaccgtggtcccgctggacct
ccagggcctcccggtccccccgggcccagtgcagaggtagaggtgagaggagatgggtct
gttgttcaaaaagtgacgggaccaagaggaccacctggacctccaggacccgcaggccct
gctggaaatgatggggagccgggtgaccctggtgaagatggaaaagctggtcaagttgga
cctcccggttttcctgggactcctggaatcaaaggagacaaaggagaccgaggtgaaagt
cagccaggaccccgtgggcctccagggcctcctggcccaccaggacccatctctcgctct
gataggcctacatttgtggacatggagggctctggatttgatatggacagtgtgcgagca
atgcccggtttgcctggcctacctggtcctcctggtccccccggcccgcctggccttcca
tcttcaggctctggtggttttgggcctcctggtcctcctgggcaaaatggagctccaggt
caaccgggacttccaggtccaccaggtactgatggaaaaccaggctcacctggcccaata
ggagagaagggtgatgccggtgagctgggcctacctggacctgtgggagagaagggcgcc
acgggtcctgccggttcccctggtctccctgggcagggtgggcttgctggtcttccagga
ccaatgggacccgttggaccaccaggaccacctggtcctcctggcccaagatatcacgtt
ggatttgatgacatggagggctctggtattcacttcagttcagtccctggggtaagagga
ccagttggaattcagggtcctcctggtatcccaggaccacaaggtatcccaggatatcct
ggtgtgaaaggtagcgaaggacttcagggacaagatggccgccctggtttggatggcttc
cctggaccacagggaccaaagggcgacaggggagacagaggcgagaggggtgaacctgga
cgagatggaactagttttccaggtccacccggcccccctggacaacctggacaaattatt
tatcgttatgctgaaaattatgatgaaactggaggagtagggcctcagggtgggagtggt
gttcctggtcaagcaggattcccaggcccaatgggaccgaaaggtgatagaggagagcct
ggtttaccaggctatgcaattaagggagaaaaaggagaacctggacttattcttggacct
gatggaaacccactttaccttggtggattggtaggccaaaagggtgagaaagggaatttt
ggaccagtcggacctcctggtccagctggacctgctggtttgaaaggtgaatttggaatg
ccaggcagacccggtcgcccaggtgtgaacggatacaaaggagagaagggagaaccgtcg
tcaggctctggatatggttacccaggtccccctggtcccccaggaccccctggtcccccc
ggtcctgctgtgcccttggacagatttggaagatatgaagattattcaaggcaataccca
gctacgaaaggagataaaggagaccagggagctcctgggattcccggatcaccaggattt
tcctcaaaccttgatatctatgccctcaagaatgagatgaagggcgagcgaggtgattcc
ggtcttaaaggagagaaaggagagccaggaggtggattttatgaccctcgttttggagct
ggacagggaccgccaggaaacccaggtcttcctggacctaaaggagactcgatcagaggt
ccccctggaccgcagggtccaccaggaccacctggggttggttatgatggtcgtccagga
aaccctggacctccgggaccccctggccctccggggtcaccgtcattgccaggagcctac
agaccaccactcagcattcccgggcctccaggtccccccggctcacctggaattcctggc
actggatctgggcaggtgactgtcatgagatcttatgacataatgtttgcgacggcacgc
agacagacagaaggtgctctgatttacattttagaccgaagcgatctctacctcagagtt
cgggatggtgtcagacaagtgatgcttggagattataaacccttctatggagagctggac
aatgaggtggcagcggtccagccgccccctgttgttcactattcccaggaccacacagcc
aacaatggagcggagcagatttctccaccgcaccagccgattgagtttccaaggagtgag
ccagagaatcgaaaccccaatccgcctgactcccgttacccagatccacgatacccacct
tacactgataacaggtacaatcctgtacaaccagaaatcagataccctgttcaacctggg
aggaaccctatcactccagcccgccgtcccagcccccctgtcaatcaaccagaaggccac
acccacacttccggaccggggttgcatcttattgccttgaattctccacaagtggggaac
atgagaggcattcgtggggcagacttcctgtgtttccagcaagctcgggccgtggggatg
aagggaacattcagagccttcttgtcttccaaacttcaggatctctacagtatcgtccgc
aagtccgacagagacacgttaccgattgttaacctcaaggatcaagtccttttcagaagc
tgggagtctctcttcagtgactccgagagcaggatgaaggacaatgctcctatgtactcc
tttgatggcagagatgtcctgagggacagtgcctggccagagaagatgatctggcacggg
tccagtggcaggggtcacaggcagacggataactactgcgagacgtggcgggccggagac
cgtgcagtgacaggtttggcctcatctctgcaggctggccaactcctccagcagacctcc
agcagctgctccagctccttcatcgtgctgtgcatcgagaacagctacatggctcaatcc
aagaaataa
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