Pimephales promelas (fathead minnow): 120477630
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Entry
120477630 CDS
T08155
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120477630
Membrane trafficking [BR:
pprm04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
120477630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_8
TPR_7
TPR_NPHP3
ARM_TT21_4th
SH3_1
SH3_9
TPR_10
Motif
Other DBs
NCBI-GeneID:
120477630
NCBI-ProteinID:
XP_039525229
LinkDB
All DBs
Position
Unknown
AA seq
1319 aa
AA seq
DB search
MSAATRRNSSKTRNDVGSDPDRIRTIRRELSDEYTHNERDSMESSFKGFKTSRGSVKGTS
GASDDNIPTVLAMQLALVEGPDGLPADEGTQEVLSRKLCVLEADLSRVTTLISEMSAHFV
SINSEERTIFITFKTLEEIWKFSTYHRMGFLGQCMENLLMDQEFWLISLDQHSGIEISIK
EETLNLMYKGFLMQEGSFFGCCTANQMFDSSTSGSDLYLEKGDIALFEPPFLGSGWTVLS
LADGSRGTKPKPALEPVLPFHEWFLKSCPETVLVGGGKDTSDLPLLIAVGVCETTEEYEA
DGPDELSFQAGERIIILGLLVACFEWFMGKSEKTGDIGLVKTNLVKATGSFCESSDIFLK
DEDKQIITLDQDKIKEETISLLKKICQSDVGTNYKLDLAKEIPGPVQNKTQEVNNLKQKV
NHILSEVDETPRKDDSSFSLKHQIDIKTNDTEESLDTPRFCVSSEQDSSSPGGHHALLSF
LSSRDYQPEFMLLYTAYPEFLISHFEGHSDEEDIVAYLGVARELARKKYVSWAQSRICFL
LGQLCAGRSKFSQARVYYEEALNVPRDCFTDMFLLSAIYSNLALIYLTQKNHDKLFTTSE
RLSALLMAVPDCLFGCEDPEVLKYVLKKAILAKNQPAEARACFILAKLHLKLKDSMSAIP
FIERLLILADEVPEACDETMSHVFLVLARLYSEQGLPRLAESSARRASLQVGATASHCLC
GVSLLMENASELYGVDIPTQVAPYLARAIALVSPGQEPALGHVHALCLSWLFHRHGMPER
AVRYMLTVLDHSSMSSVGQSDTTAALIWMAWLYICNQQPGTALEVLDAVLSSLPEHCTTQ
LEGVVYNMRAISYRHSADIRQAAESYRAAIEICEEFEDRHNWAIALANYGFMCLQIKAKR
LAEEYLTQSVELFSELEDEGHELSFISVLLELGRHYISQGKHENGKIYYEWALLTAMYID
HMDSQLQAARHLCQLYEEVCPDEAQCIIYNKHQLELLRQMGDKSLEGEILEKISQLYLNL
ATEKSNRAALDYTKQSLGIFIDLGRKRKEAHAWLQSGKIYHILQQTELVDLYVQVAQDMA
LSTGDTLFALEMLEAAGDVFFNSSQDREKAICFYRDRALPIAVKTSSVRSQLRLCNKLSE
LLLQLGQCSEAIEFTQTALDISVSLADHLNERVAFHRLATLYHCVGQFEMAEHHFLKALS
LCPSPLQYDEEALYYVRVYQTLGDIIFYDVKDPFDAAGYYHLALAAAMDLGNKRSQLELC
TRLATIYHNFLMDRELSLFFYQRARAFANDLHIRRINLAPDYSFRTTAQYKNTITGATR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgctactcgtagaaactcgtccaaaaccaggaacgacgtggggtccgatccg
gacagaattcggacgatacgtagagagctgtctgatgagtatacacataatgaacgggat
agtatggagtcttcatttaaaggttttaagacctcaagaggaagtgtcaaaggaacttca
ggagcttctgatgataatataccaacagtgttggctatgcagctggctttggtggagggg
ccagatggacttcctgccgatgagggcacacaggaagtgctcagcaggaaactttgtgtg
ctggaagctgacctctcaagggtcacgaccttaatctctgaaatgtccgctcactttgta
tccatcaacagtgaagaaaggactatatttatcacttttaaaacccttgaagaaatatgg
aagttcagcacataccacagaatgggcttcttgggtcagtgtatggaaaaccttctcatg
gatcaggagttctggttaatctctcttgatcagcattcaggaattgagatctcaattaaa
gaagagacactaaatctgatgtataaaggctttctaatgcaagaagggtctttctttgga
tgctgcacagcaaatcagatgtttgatagctctacttcaggtagcgacctttatttggag
aagggggatatcgccctgtttgagcctccatttctagggtcagggtggacagtgctttca
ctggcagatgggtctagaggaaccaagccaaaaccagctctggagccagtcttacccttt
catgagtggtttctaaagtcctgcccagagactgtattagtgggtggtggaaaagacact
agtgaccttccattactgattgcagtaggggtctgtgagaccacagaggagtatgaggct
gacgggccagatgaactgagtttccaggctggtgaacgcatcatcatcctgggcctgctg
gtggcctgttttgaatggtttatgggaaaatctgagaaaactggggatatcggacttgtc
aaaaccaacctggtcaaagcaaccggttcattttgtgaatcatctgacatattcttgaaa
gacgaggacaaacaaattattaccttggatcaggacaaaattaaagaggagactatttct
ttattgaagaaaatatgccagagtgatgtcggcacaaactacaaacttgatttggcgaaa
gaaattccaggaccagttcaaaacaagactcaagaagtgaacaatctaaaacagaaagtc
aaccacattttgagtgaagtcgatgagactccaagaaaggacgactcatcattcagcctc
aagcaccagatagatataaaaactaatgatacagaggaatccctggacacccctcgtttt
tgtgtcagctctgagcaggacagcagcagtccaggcggacatcatgctctcctctcattc
ttgagcagtcgtgactaccagcctgagttcatgctcctgtacaccgcttacccagaattc
ctcatctcacatttcgagggtcactctgatgaggaggatatagtggcgtatttaggtgta
gcccgagaattggcacgaaagaagtacgtctcgtgggcgcagagccgaatctgttttctt
ctcggacagctttgtgcagggaggtcaaagttctctcaagctcgggtttattatgaggaa
gccttgaatgtacccagggattgtttcacagacatgtttctgctttccgccatttactcc
aacctggcactcatctacctaacacagaagaaccatgacaaattgttcactacgtcagag
cgcttgtctgctttgttgatggcggtccctgattgtttgtttggctgtgaggaccctgag
gtattgaagtatgtactaaaaaaggccatcctggccaagaatcagcctgccgaggcccga
gcctgcttcatcctggcaaagctccacctgaagcttaaagacagcatgagtgcaatcccg
ttcatcgaaaggcttttgatccttgctgacgaggttcctgaagcatgtgatgagactatg
agccatgttttcctggtgttagcacgactctacagcgaacagggtctgccacgtttggcc
gaaagctccgcacggcgagcatcacttcaggtaggagccaccgcttcacactgtctttgt
ggtgtctctctgttgatggaaaacgcatcagagctgtatggagtggacatcccaacacaa
gtggctccatacctggcccgtgccattgctttagtgtcccccggccaggagcctgcgctg
ggtcatgtccacgctctgtgtttgtcctggctcttccatagacacggcatgcccgagaga
gcagttcgctacatgctaaccgtcctcgaccacagcagcatgtccagcgttggccagtca
gacacgactgctgctctcatttggatggcgtggctgtacatctgcaaccagcaacccggc
accgctctggaagtgctggatgctgtcctgtcatccctcccagagcactgcacaacacaa
ctggaaggtgtggtttacaacatgcgggccatttcatacagacattcagcggacatccgt
caagcagctgagagttaccgggctgcaatcgagatatgcgaggagtttgaggacagacat
aactgggccatagcgttggccaactatggattcatgtgtttgcaaatcaaggcaaaaaga
ttggcagaagaatacctcactcagtcagtggagctgttctctgagcttgaggatgaaggg
catgaactcagttttatttcagtgcttcttgagttagggagacactatatttcccaggga
aaacatgagaatgggaagatctactatgaatgggccctgttgaccgccatgtacatcgat
catatggacagccagctccaagccgcacgtcacctgtgtcagctatacgaagaggtgtgt
ccagacgaagcccagtgcatcatctacaacaagcaccagctggaacttctccggcagatg
ggagacaagagcttagagggagagatactggagaagatcagccagctctacctgaacctg
gccaccgagaaatccaacagagctgctttagattacaccaagcagagcctgggcatcttc
atcgacttgggcaggaaacgtaaggaggctcatgcctggctgcagtcagggaagatttac
cacatcctccagcagacggagctagtggacctctacgtgcaggtagcccaggacatggcc
ttgagcacaggagacacgctcttcgccctggagatgttggaggcagcaggggatgttttc
ttcaacagttcacaggacagagagaaagccatctgtttttacagggaccgagcccttccc
atcgcagtgaagacgagcagtgtgcgctctcagcttcggctgtgtaacaagctttcagag
cttcttctgcagctgggacagtgttcagaggccattgagttcactcaaaccgcattagac
attagcgtgagtctggctgaccatttaaatgaacgtgtggcattccatcgcctcgccaca
ttgtaccattgtgtgggtcagtttgaaatggcagagcaccactttctgaaagccctgtcc
ctgtgtccctcaccgctgcagtatgacgaggaggccctgtactatgtcagggtttaccaa
acacttggagacatcatcttctatgatgtaaaggacccgtttgacgccgctggctattat
cacttggccttggctgctgctatggatctgggcaacaagagatctcagctagagctgtgc
actcgattggccactatctaccacaactttcttatggaccgggaactctcgctgttcttc
taccagcgagcgcgagctttcgctaatgacctccacattcgccgtatcaacctggctcca
gactacagtttcaggaccacagcccagtacaaaaacacaataactggggcaacaagatag
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