Pimephales promelas (fathead minnow): 120477669
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Entry
120477669 CDS
T08155
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120477669 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120477669 (dhx16)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120477669 (dhx16)
Spliceosome [BR:
pprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120477669 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120477669
NCBI-ProteinID:
XP_039525285
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MANLEQWVSDQLHDILGLSDRYVAQFMIGLVKKSSGPQDFVARLQQTGTIDVDQRITAFA
HELYNKAPKKHVAEKPARAIERKVIEMERKNRTYTLLEDSESDGETEDRGNEKKSKDRDK
GKKRKHLRQKREESPSSSEEDKKKSTKVMDEPRGAKAAKEEDEEEWEREERERIQDLEER
DAFAERVKQKDKDKTRHVLERNDKKAYEEAQKKHKMAEEDQRKMLPELRKQSRRQYLNKR
EQEKLEDLEAEIADEEYLFSTQKLTTKERKDLDHKRQIRDLARDYKKAGAKEQEERKNRY
YMPEENRNKSIPQKNMELEFEETPREGGGEQGRWEEARVATATLQFGAREERERRIKEEQ
EKYQLILEEEEMINFVSTAITMKGTLSEKESEPEISQAEKEKQSIQEVRRSLPIFPYRED
LLAAIKHHQLLVIEGETGSGKTTQIPQYLVEDGYTEGGMKIGCTQPRRVAAMSVAARVAQ
EMNVKLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTL
HTDILFGLIKDIARFRPDLKVLVASATLDTERFSSFFDDAPVFRIPGRRFPVDIYYTKAP
EADYLEACVVSVLQIHVTQPTGDILVFLTGQEEIEACCELLQERCRRLGSKISELLVLPI
YANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGME
SLIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLL
KSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKM
ILASEHYKCSEEVLTIAAMLSVNNTIFYRPKDKVVHADNARMNFVVPGGDHMVLLNVYTQ
WVESGYSTQWCFENFIQFRSMKRARDVRDQLEGLMDRIEVELCSSDSDSVPIRKAVTAGY
FYHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWMIYHELVFTTKEFMRQVIEIDNSW
LLEVAPHYYKNKELEDGSSKKMPRKQGKAREELG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggaacagtgggttagtgaccagcttcatgacatcctgggtttgagtgac
agatatgtggctcagttcatgatcggtctggtgaagaagtcttctggacctcaggacttt
gtggctcggcttcagcaaaccggaaccattgacgttgatcaaagaatcacagcgtttgca
catgagctgtataacaaagctcccaaaaaacatgtggcagaaaaacccgcccgagcgatt
gaacgaaaagtcatcgaaatggagagaaagaacagaacctacactcttctggaggacagt
gagagtgatggagagacagaggacagaggaaacgagaagaaaagcaaagaccgggacaaa
ggaaagaagaggaaacacctcagacagaaacgtgaggaaagtccatcctccagtgaagag
gacaagaaaaagagcactaaggtcatggatgagccaagaggagccaaagctgctaaagag
gaggacgaggaagaatgggagcgggaagagagagagagaattcaagatctggaggagagg
gatgcatttgctgaacgagtgaaacagaaagacaaagacaagacaagacacgtacttgaa
agaaatgacaaaaaggcttatgaggaagctcagaaaaagcacaaaatggctgaagaggat
caaagaaaaatgcttccagagttaaggaaacagtcacgacggcagtatctgaacaaaagg
gagcaggagaagctggaagacctcgaggctgaaattgcggatgaggaatacctcttctcc
actcagaaactcaccacaaaggaaaggaaagatctagatcacaagcggcagatcagagac
ctggcccgagactacaagaaagcaggagctaaagaacaagaggagagaaagaacagatac
tacatgccagaagagaacagaaacaagtccattcctcaaaaaaacatggagctggagttt
gaggagactcccagagagggaggcggggagcagggccgctgggaggaggcgagagtggcc
accgccaccctgcagtttggggccagagaagagcgggaacggcggataaaggaggagcag
gagaagtatcagctcattttagaggaagaggagatgatcaacttcgtcagcacggccatt
accatgaagggaacgctgtcggagaaggaaagcgaacccgagatatcacaagctgagaaa
gagaagcagtccattcaggaagtgagacgcagcctgcccatctttccttacagagaagac
cttctagctgccatcaaacaccaccagttgttggtcatagagggggaaaccggatctggc
aagaccacccagatccctcagtatcttgtggaagatggttacactgaaggaggaatgaag
attggctgcactcaacctcgaagagtggcggccatgtctgtagcggctagagtcgcacag
gaaatgaatgtcaagctaggaaatgaggtgggctacagcatccgttttgaggactgtacg
tcagagaggaccatcctgaagtacatgactgatggcatgttgctcagagagtttcttaca
gagcccgacctcgccagctatagtgtgatcatcatcgatgaggcccacgagcggacgtta
cacacagacatcctcttcggtctaattaaagacattgcacgtttccgccctgatctgaag
gttctggtggccagtgccactctggacacagagcgtttctccagcttctttgacgacgcg
cctgtatttaggattccaggccgcaggttccctgtggacatctactacactaaggctcca
gaggccgactatctggaagcatgtgtggtgtcagtgctacagatccatgtcactcagccg
actggagacatactggtcttcctcacaggacaggaggagatcgaggcgtgctgtgaactt
ctacaggagagatgtaggagactgggttctaagatatctgagctccttgttcttcccatc
tatgccaacttgccctcggacatgcaggccaaaatcttcaatcccactccgcctggagca
cgcaaagttgtggtggccacaaatatcgcagagacgtctctgaccattgatggcatcatc
tacgtgattgatccaggtttctgcaaacaaaaaagctacaatgcaagaacaggaatggaa
tctctcattgtcacaccctgttcacgcgcctctgccaatcagagagcaggtcgtgcagga
agagtggctgctgggaaatgttttaggctgtacactgcctgggcctttaaacatgagatg
gaggagaccactgtccctgagatccagagaacaaaccttggaaatgtggttctgctgctc
aaaagtcttggcataaacgacctgattcattttgacttcatggatcctcctcctcacgaa
acgctggtgttggctctggagcagctctacgctttgggcgccctcaatcacctcggtgaa
ctcactaagctcggccgaaggatggctgaacttcctgtggaccccatgctgagtaaaatg
attctggcttctgaacattataagtgctccgaggaggttctgaccattgcagccatgctg
tcagtgaacaacaccattttctaccgcccaaaggacaaagtggtccacgctgacaatgct
aggatgaactttgtggtaccaggaggagatcacatggtgctgcttaatgtatatacacag
tgggtagagagcggttactccactcagtggtgcttcgagaacttcatccagttccgctct
atgaagagagctcgagatgtgcgtgatcagctggaggggttgatggacaggatcgaggtg
gaactgtgcagctccgacagtgacagcgttcccatccgcaaggctgtgactgcgggatat
ttctaccacacagcacgcttgagtaaagggggttataaaacagtcaaacaccagcagact
gtttacgtccatcccaacagctcactcttcgaggaacagccacgctggatgatctatcac
gagctggtcttcaccaccaaagagttcatgagacaggtgatagagattgataacagctgg
cttctggaagtggctcctcattattataagaacaaagaacttgaggacggcagcagtaaa
aagatgccccgcaaacaaggcaaagcccgtgaagaactgggctga
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integrated database retrieval system
