Pimephales promelas (fathead minnow): 120477781
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Entry
120477781 CDS
T08155
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm02010
ABC transporters
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120477781
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120477781
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pprm02000
]
120477781
Transporters [BR:
pprm02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120477781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
120477781
NCBI-ProteinID:
XP_039525528
LinkDB
All DBs
Position
Unknown
AA seq
2239 aa
AA seq
DB search
MSLLTQLRLLLWKNFTLRKRQKVRLVVELVWPLFLFFILVAVRSTNQPIYKSQCHYPNKP
LPSAGVLPWVQGMLCNIQNPCVSYPTPGEAPGQVNNFNDSTVSKVLIEVQSLLADPALFS
NIQLISDDVGQWMSVLQNANPAGGQSIPLRNLLRTNETFSEYLTNSLSVPSTTATSLMRV
KVRLGQLPALSSEGDLRSVLCSDESVNRILEFNSSNQKADFQNITCSLTANQLLQARQVF
MQNVDNMKLLNALPIALGLNRLETGVLMAKTGVHITPLMTVISNFGSSALLSAVGTLDFR
SDPFGSLSELMCGTDSNTTSKTTSRDVLRTVSTESDQQNTRAATADDTNTTSTNTSEYCK
NLTDTMESSSSLRLLWKTVRPFLQGKILYTPDTNVTRSIVTEANRTFDALAKVGELAEAW
LQNKDLIWTFFNSSTQINTLRGLLKNPVLAVVLDQSLEDTSLSTALISNFLFNGPESKRP
AGMPAFDWRNIFIAISQIAQQLTQILPCFDLDKFEGVSSETVLVEQSFKLLNQDKFWAGL
VFTNLYDSSDLPPPHIRYKIRMDIEETERTDKIKERSWSPTARDNPFNGLRYVSGGFVYL
QDMVDRGITKVQTGVSQPLGVFAQQMPYPCYVDDSFVSSIATILPMFLVLAFIYTACQTI
KGLVLEKELRLKEVLRVVGVQNGSIWFCWFIENMVLMSIPCALISLMVKYGKILRYSDPS
VIFVFLLVFCVATVMQCFFISVFFSRANLAAACGGLIYFLLYLPHVLCYAWRDVLGFGAK
IATSLLSCVAFGYGCENFARYEEQGIGIQWSNIRVSPQENDRYSFIVSIFMMLFDALIYW
TMTWYIENVFPGQYGIPKPWYFPFTSSYWCGTLVGSDAEPDLLNEIEDKNGYLEKCPSGM
KAGVCIRNLVKVYKTGNKLAVDGLSLDFYQDHITSFLGHNGAGKTTTMSILTGLFAPTSG
TAYINGKDIRTDMDTIRTHLGMCPQHNVLFNDMTVEEHIYFYARLKGRSSKEVKKEIDQM
INDVGLPHKRKDLAKNLSGGMQRKLSVAIAFVGGSNVVILDEPTAGVDPYARRGIWELLL
KYKKGRTIILSTHHMDEADILGDRIAIISHGRVCCCGSSLFLKKKYGRGYYLTLARANQD
QVTTQRVPSIKECDKFSVDEGICSDSISSLDPPDVADLSRLVRRHVPEAEFLEVIGQELV
YVLPYAGARDGSFATLFKELDLEKSTLGVTSYGISDTSLEEIFLKVAKDTGVDVESNDKK
GNFEQQPRSSSRISGIQAISSVLESKDENTEKNEVKVKHTSRVEDVQRPMCANGKGSHVI
MGWSLIKQQFLALFIKRFHHARRSRRGIIAQVVMPAFFVCLALIFSLIVPPFVEYPNLEL
QPWMYGAPQNTFYSFDSPGVDQVEKVTQALLSSPGFGTRCMSSHPIPKLPCNPTGGTDWF
TPAVDPSVSEIFEKGNWSFENPSPECQCSTPQRSIMLPDCPLGAGGLPPPQRTQNTTDTL
QNVTARNITDFLLKNYQKSGKIRYGGISVGGVNSQVNLNESDITELISNLKSFFNISQNN
ETEYIFQAIRLVLLEMGTRDNVKVWFYNQGWHSLVSFLNVASNGILRGNLPAGRRANEYG
ITTFNHPLNLTKEQLSSASMATTSTDVVVSICVIFAMSFIPASFVLFLIQERVSKSKHLQ
FVSGVNPTIYWLANFTWDMCNYAIPCIIVIVIFLCFQQKSYVSPPNLPALILLLLLYGWS
ITPMMYPASFLFSVPSTAYVVLTCINLFIGINGSVATFVMELFDDPNITRINDIVKQALL
VFPHFCLGRGLMDMAQNQAMANLYKNLGEDRFENPLNWNLVGKNLFAMSIQGAVMFGLTL
LIQYKFFCKPRSIKSLPTSSGGEDEDVTRERERVHQGGAQNDLLQICDLTKMYRVKATPA
VDKICVGVPAAECFGLLGINGAGKTTTFKMLTGDISPTAGDAFVNGYSIRSEMQLVQQNM
GYCPQFDAIDDLLTGREHLEFYARLRGVPEKEVSMVAEWGVQKLGLVKYSGKSAGTYSGG
NKRKLSTAMALIGCPPLVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECE
ALCTRMAIMVNGQFKCLGSIQHLKSRFGEGYTLIVRVCADQTDICVVESFVRDTFPGSTL
KEKHHNTLQYQIPQGEGTLAHIFSQLTKHQQMLRVEDYSVSQTTLDQVFVNFARQQRDEE
DGVFENVVDLSDEIQISAT
NT seq
6720 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcctgacacaactcagattgttactgtggaagaactttactctacggaaaaga
caaaaggtgcggttggtggtggagctggtttggcctctgtttctattcttcattcttgtg
gcggtcagatccaccaatcagcctatttataaaagccagtgccactaccccaataagccc
ctcccatcagcaggtgtgttgccatgggtacagggcatgttgtgtaacatacagaacccg
tgtgtcagttatcccacacctggtgaagcacccggacaggtgaacaacttcaacgactcc
acagtatcaaaggttttgattgaagttcagtcactcctggcagatccggccctcttcagt
aacattcaactgatctctgatgatgtcggccaatggatgtccgtcctgcagaatgccaac
ccagctggaggtcagtccattccgcttcgcaatttgctgagaaccaacgagacgttttca
gaatatctgacgaacagcctttctgtgccaagcacaacagccacgagcctgatgagggtg
aaagttcggctcggccagttgcctgcgctctcaagtgagggagatctgcgctctgtgctc
tgcagtgatgaatcagtcaatcgcatcctggagtttaattcatccaatcagaaggcggat
tttcagaatatcacatgctccttgacagccaatcagcttcttcaagccagacaagtattc
atgcagaatgttgacaacatgaaacttctaaatgcacttccaatagcattgggtctgaac
cgcctggagacgggcgtactgatggcaaaaaccggcgttcatatcactccactaatgaca
gtgatttctaattttgggtcttcagcgctgctaagtgcggtaggtactttggacttcagg
tccgatccatttggaagcctcagtgagctgatgtgtggaacagacagtaacaccacgtcc
aaaaccaccagcagagatgttttgaggaccgtgtcaacagaatcggaccaacagaacaca
cgggccgcaacagccgatgacaccaatacaaccagcactaacaccagtgagtactgtaaa
aacttgactgacacaatggagagctcgtccagcctgcgtctgttatggaaaaccgtcaga
ccctttctgcaaggaaaaatcctctacactcccgacacaaatgttacacggagcattgtt
acagaggccaatcgcacctttgacgctttggctaaagttggcgaactggcagaggcatgg
ctgcagaataaagatctgatctggacttttttcaacagcagcacacagatcaacacgcta
cggggtcttctgaagaaccctgttcttgctgtagttctggaccagagtttggaggatact
agcctgtccacagcgcttatcagcaacttcctgtttaatggtcccgagtccaagcgccca
gcaggaatgccagccttcgactggcgtaacatcttcatcgccataagccagatagcacag
caactcactcagattctaccgtgttttgatctggataagtttgaaggtgtcagcagtgag
actgtgctggttgaacagtcttttaagctcctgaatcaggacaagttctgggccggactg
gtcttcacgaatctctatgactccagtgacctccctccaccccacatcagatacaagatc
cgaatggatatcgaggagactgaaagaactgacaaaatcaaggagaggtcctggtcccca
acggcccgcgacaacccatttaatggcctgcggtacgtgagtggagggtttgtgtacctg
caggacatggtggatcgaggaatcactaaggtccagactggagtcagtcagccgctcgga
gtattcgcacaacagatgccatacccatgttacgtcgacgacagctttgtttcatccatt
gccaccatcttgcccatgttcctggtgctagctttcatctacacggcctgccaaaccatc
aaaggcctggttctcgagaaggagctccgtctgaaggaggttttgcgggttgttggtgtt
cagaacggttcaatatggttctgctggttcatagagaacatggttctgatgagcattccc
tgtgctttgatctctttgatggtgaagtatggaaagattctgcgatacagtgacccctcc
gtgatctttgtcttcctgctggtcttctgcgtggcaactgtcatgcagtgctttttcatc
agtgtgtttttctctcgggcgaatctggcagctgcctgtgggggcctcatctacttctta
ctctacctccctcatgtgctttgctacgcctggagggacgtcctgggctttggagccaag
attgccacgagcctgctatcatgtgtggcgtttggatacggctgtgagaatttcgcccgt
tatgaagagcaaggcatcggtattcagtggagcaacatccgggtcagtccacaggagaac
gaccgctactccttcatcgtttccatcttcatgatgctgtttgatgctctcatttactgg
acaatgacctggtacatcgagaatgtttttccaggtcagtatggtatcccaaagccctgg
tattttccctttacttcctcgtactggtgtggaactctggtgggatctgatgctgaaccc
gacctgcttaatgagatagaggacaagaacggttacttggaaaagtgtccatctggaatg
aaggctggtgtgtgtatccgcaacctggtaaaggtctataagacgggaaataaactggct
gtggacggacttagcctggacttctatcaagatcacatcacctcatttttaggacataac
ggagccggaaaaaccaccactatgtcaatactgacgggtctttttgctcccacctctggt
accgcttatattaatggcaaagacatccgcactgacatggacaccatcaggacacacctg
ggaatgtgtccacaacacaacgtcctcttcaatgacatgacagtggaagaacacatatat
ttctatgcccgcctgaagggacggagttctaaagaggtgaagaaggaaattgatcaaatg
attaacgacgtgggtctacctcacaagcgcaaagacctcgccaagaacctctcaggtggg
atgcagaggaagctgtccgttgctatcgcatttgtgggcgggtcaaatgttgtgattttg
gatgagccaacagcaggagttgatccctatgcacgccgaggcatctgggagttgctgctc
aaatacaagaaaggtcgtactataattctgtctacccatcacatggatgaagcggatatt
ctgggcgatcgtattgccattatctcgcatgggcgcgtctgctgctgtggttcctcactc
tttctcaagaaaaaatacggtagaggctattacctcacgctcgcacgggccaatcaggat
caagtcaccacacaacgggtcccatcaattaaagagtgtgataaattcagtgtggatgag
ggaatatgcagtgacagcatcagcagtctggacccaccagatgtggcggatctgagtcga
ctggtgcgacggcacgtgccggaggccgagtttctggaggtcattggtcaagagctggtg
tatgtgctgccctacgcgggcgctagagacgggagctttgctaccctgtttaaagagctg
gacctggagaaaagcactctgggcgtcactagctatgggatatcagatacaagcttggag
gagatctttctgaaggtggctaaagacacaggtgttgacgtggaatccaatgataagaaa
ggaaattttgaacaacagcccagaagcagctcaaggatatcaggaatacaggctatcagc
tcagtattggaatccaaagatgaaaacactgagaaaaacgaggtgaaggttaaacacact
agtcgtgtagaggacgtccagcgccccatgtgtgcgaatggcaaagggtcgcacgtcatc
atgggttggtcactgatcaaacagcagtttttagctctttttatcaaacgatttcaccat
gcccgtagaagcaggagaggaatcatcgctcaggttgtgatgccggcattctttgtgtgt
ctggctctcatcttctctctgattgttcctccgtttgtggaatatcccaatctggagctt
cagccttggatgtatggagctccacagaataccttctacagttttgatagtcctggtgta
gatcaggtggagaaagtgacacaagccctgctcagttcaccaggatttggaacacgctgc
atgagctcccaccccatacctaaattaccctgtaaccctacgggaggcactgattggttc
actcctgcggtggatccatccgtcagtgagatctttgagaagggtaactggagcttcgag
aacccgtcgcctgaatgccagtgcagcacaccgcaacggagcatcatgctgccagactgc
ccgctcggagccgggggtttaccaccaccacagagaactcagaacaccacagacaccctt
cagaacgtcacagctcgaaacataaccgacttcctgctcaagaactaccagaaatcaggc
aaaatacggtatggaggaatctccgtaggtggtgtgaactcacaggtcaatctgaatgag
tctgacattacagaactgatcagcaacctcaaatcattcttcaacatctcacagaataac
gagactgaatacattttccaggccattcggttggttctattggagatgggcaccagagac
aatgtgaaggtgtggttctataatcagggttggcattcactcgtatcgttcctgaacgtg
gccagtaatggcattctgagaggaaacctgccagcgggacgtagagcaaatgaatacggc
atcacaacattcaaccacccgcttaatctcactaaagaacagctctcgtctgcatcaatg
gccacgacctctacggatgtagttgtgtcgatttgtgtgatttttgccatgtccttcatc
cccgccagcttcgtcctcttcctcatccaggagcgcgtcagtaaatccaaacacctgcag
tttgtgagtggcgtgaatcctaccatctactggctggccaacttcacctgggacatgtgt
aattatgccatcccgtgtatcatcgtcatcgtcatcttcctgtgtttccaacaaaaatcg
tacgtctctccacccaacctacctgcgctcatactgctgctgttgctttatgggtggtcc
atcactccgatgatgtatcccgcctcgttcctgttcagcgttcccagcacagcgtatgtg
gttctgacctgcatcaacctcttcattggcatcaatggcagcgtagccacattcgtcatg
gagctctttgacgacccgaatataactcgcatcaatgacatcgtgaaacaggctctgcta
gtgtttcctcatttctgtttgggaagaggcctgatggacatggcccaaaaccaggcaatg
gccaacctctacaaaaacctgggtgaagaccgctttgaaaatcctctcaactggaacttg
gtgggcaagaatctgtttgccatgtccattcagggtgcggttatgttcggcctgaccctt
ctcatacagtacaagttcttctgcaaaccaaggtcgataaagtcactgcctacatcatca
ggaggagaggatgaagatgtgactcgggagcgtgaacgtgtgcaccagggtggagctcag
aatgacctgctccaaatatgtgaccttactaagatgtaccgtgtgaaggctactccagcc
gtggataaaatctgtgtgggtgttcctgctgcagagtgttttggtttgttggggataaat
ggtgcaggtaaaactacaacttttaaaatgctgactggagacatcagccccacagcagga
gatgccttcgtaaacggatacagcatccgcagtgaaatgcagttggtgcagcagaatatg
ggttactgtccgcagtttgatgcgatagatgaccttttgacaggaagagaacacctggag
ttctacgctcgactccgaggggttccggaaaaggaggtttccatggtggctgagtggggt
gttcagaagctcggccttgtaaaatactcagggaaatctgcaggaacgtatagcggcggc
aacaagcgcaaactctccactgccatggctctgattggctgccctcctctagtcttcctg
gatgagcccaccacaggtatggaccccaaggcccgccgttttttgtgggactgtatcctc
agtgtgatcaaggaggggagatctgttattctcacctcacacagcatggaggagtgtgaa
gcgctctgcacgcgtatggccatcatggtgaacggacagttcaaatgcctgggcagcatc
cagcaccttaagagcaggttcggggaaggttacacactgatcgttcgtgtgtgtgccgat
cagaccgacatatgcgtggtggagtcatttgtgcgggacacgtttcctggcagcactttg
aaagagaaacatcacaacacactgcagtaccagataccgcagggagagggaaccctggcg
cacatcttcagccagctcaccaaacaccagcagatgctgcgcgtggaggattactctgtt
tcacagaccacactggaccaggtttttgtgaattttgcgcggcagcagcgtgatgaagag
gacggggtgtttgagaacgttgtggatctgagtgatgaaatacaaatatcagcaacataa
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integrated database retrieval system
