Pimephales promelas (fathead minnow): 120477799
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Entry
120477799 CDS
T08155
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120477799 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120477799 (dhx15)
03009 Ribosome biogenesis [BR:
pprm03009
]
120477799 (dhx15)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120477799 (dhx15)
Spliceosome [BR:
pprm03041
]
Complex A
U2 snRNP components
U2 related factors
120477799 (dhx15)
Complex B
120477799 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120477799 (dhx15)
Ribosome biogenesis [BR:
pprm03009
]
Eukaryotic type
90S particles
Helicases
120477799 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SRP54
AAA_25
AAA_29
DUF3915
Motif
Other DBs
NCBI-GeneID:
120477799
NCBI-ProteinID:
XP_039525597
LinkDB
All DBs
Position
Unknown
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDRDDRSKDRDRDRDRDRDRDRDRERDNKGSGV
PLCVPTVGILPLKQTAMNQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILNRHQ
SFVLVGETGSGKTTQIPQWCVDMVRSLAGPKRGVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTLPP
QQQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALV
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacggcatcggttggatttaggtgatgattattcgtcgagcaagaagagatct
tctgacggtaaggaccgggacagagatcgggacgatcggtcgaaggatcgcgatcgtgac
cgcgacagagaccgagaccgcgatcgggaccgagagagggacaacaagggatcaggcgtg
cccctctgcgtacctaccgttgggatacttcctctgaagcagacagccatgaatcagcag
atcaacccctttaccaacctgcctcacacaccccgttactacgagatcctcaagaaaagg
ctgcagttgcccgtttgggagtacaaagaacgatttaatgacatcctcaaccgtcatcag
agctttgtgctcgttggagagacaggctctggaaagaccacacagatccctcagtggtgt
gtggacatggtgaggtccctcgctggcccaaagcgtggcgtcgcttgtacgcagccacgt
agggtggcagccatgagtgtggctcagagagtggcagatgaaatggacgtcatgctggga
caggaggttgggtactcaatcagatttgaggactgtagctctgcaaagaccatactgaaa
tatatgactgatggtatgttactccgtgaggctatgaacgaccccttactggagcgatac
ggtgtcatcattctcgatgaggctcacgagcgcacattagccacagatattctgatgggc
gtcctcaaagaagtggtccgtcagcggtccgaccttaaggtcatcgtaatgagcgccact
ctggacgctggaaagttccaggtttattttgacaattgccccttgctcaccattcccggc
cggacgcatcccgtggagatcttttacacacccgagccggagagagactacttggaagcg
gccattcgcactgtcatccagatacacatgtgtgaggaagatgagggagatgtactgctc
ttccttactggacaggaggaaatcgatgaagcctgcaaacgcatcaaacgagagattgac
gatctcgggcctgaggttggtgacatcaaaatcatcccgctctactccacgctgccgcca
cagcagcagcagaggatctttgagccacctccaccccgcaaaccaagcggcgccatcggc
aggaaggttgtggtttctacaaacatcgctgagacgtccctgaccatcgatggcgtggtg
tttgtaattgatcctggctttgccaagcaaaaggtgtataaccctcgtattcgagtcgag
tcgctgctcgtaacggctattagtaaggcttcagcccagcagagagccggtcgtgccgga
cgtacgcgcccaggaaagtgcttccggctctacaccgagaaggcctacaagactgagatg
caggataacacataccctgagattctcaggtcgaatttgggctctgtggtgctacagctc
aagaagcttggtatcgatgacctagtgcactttgacttcatggacccaccagctcctgag
accctgatgcgagccctggagctgttgaactatcttgcagcattgaatgatgatggggac
ctgacggagctgggctccatgatggctgagttccctctcgacccccagctagccaagatg
gtcattgccagctgcgagttcaactgctccaatgagatcctgtccatcaccgcaatgtta
tcagtcccacagtgctttgtgcgtcccaccgaagccaagaaggcagctgacgagtccaaa
atgaggttcgcccacatcgacggggaccacctgaccttgctcaacgtctaccatgccttt
aaacagaaccacgagtctgtgcagtggtgctatgataacttcgttaactaccgctcactg
atgtcggctgataacgtgcggcagcagctctcacgcatcatggaccgcttcaacctgcca
cgacgcagcacagagttcaccagccgagactactacatcaacattcgccgagctctagtc
accgggttcttcatgcaggttgctcacctggagcgcaccggccactatctcacagtgaag
gacaaccaggtggtccagttgcacccttccaccgtactggaccacaagcccgagtgggtt
ctctacaatgagtttgtgctgaccaccaagaactacatccgcacctgcactgatataaaa
cccgaatggctggtgaaaatcgctccgcaatactatgaaatgggtaacttccctcaatgc
gaggctaagaggcaactggagcgcattattgctaaacttcaaaccaaggagtactctcaa
tactga
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integrated database retrieval system
