Pimephales promelas (fathead minnow): 120477848
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Entry
120477848 CDS
T08155
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120477848 (lingo1a)
Membrane trafficking [BR:
pprm04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
120477848 (lingo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRR_9
LRRNT
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
120477848
NCBI-ProteinID:
XP_039525696
LinkDB
All DBs
Position
Unknown
AA seq
616 aa
AA seq
DB search
MVAGEVSGHSFLVACWQPILILMLGTVLSGSATGCPSRCECNAQERSVLCHRKKLMSVPE
GIPSETRLLDLSKNRIKTINPDEFSAFPHLEELELNENTISAIEPGAFNNLYGLQSLGLR
SNKLKLIQLGVFTGLSNLTRLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEQLTLEKCNLTSVPTEAFTHLHSLVTLRLRNLNINSIRDYSFKRLYRLKVLEIA
NWPYLDTMTTNCLYGLNLTSLTITNANLTSIPYLALRHLVYLRFLNMSYNPIQMIEGNRL
HDLLRLQEFHLVGGRLTTIEPYSFRGLNYLKILNVSSNALTTLEEAAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCSSPEFVQGKEFKDFPDVLQPNYFTCRKSRIR
DRKPQQKFVDEGTTIHFVCQADGDPTPVIMWLSPQKQFITMKTIGRLTVFPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTALAHLHVHSYSPDWPNQPNKTLAFISNQPNDNGANGTRAT
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNSKHNIEIEYVPRKSDAGMS
SSGNADAPRKFNMKMI
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtagcaggggaagtgagtgggcacagcttcctggtggcgtgctggcagcccattcta
atcttgatgctgggcacggtgctgtccggctctgccacgggctgcccatcacgctgcgag
tgcaatgctcaggagcgctcggtcttatgccaccgcaagaagctgatgtccgttccagag
gggatcccgtcggaaacacgactcctggacctcagcaagaatcgaatcaaaaccatcaac
ccagatgagttctctgcctttccgcacttggaagagctggagctcaatgaaaacaccatc
tcggccattgagcccggtgcctttaacaacctgtacggcctgcagagcctgggactgcgc
agcaacaagctgaagctcatccagttgggagtgttcacaggcctcagtaatctaacacgg
ctggacatcagtgaaaacaagatcgtaattctgctggactacatgttccaggacctctac
aacctgcgctccctggaggttggggataatgaccttgtcttcatatcccaccgggcgttt
catgggctcagcagcttggagcagcttacgctagaaaagtgcaacctgacctctgtcccg
acagaggccttcacgcatctgcacagcttggttacgctgcgcttgcgaaacctcaacatc
aacagcatccgagattacagcttcaagcggctctaccgtctcaaagtcctggaaatcgcc
aactggccctacctggataccatgaccaccaactgcttgtacggattgaatcttacctct
ctaacgatcaccaatgcaaacttgacgtcgattccatacttggctttgcgacacctggtt
tatcttcgtttcctcaacatgtcctacaatcccatccagatgatcgagggcaaccggctc
catgacctgctccgactgcaggagttccacctggtgggcggtcgactgacaacgatcgag
ccctactccttcagaggactgaactacctgaaaatcctcaatgtctccagcaatgccctc
accaccctggaggaggctgcgttccattcagtggggaacctagagaccctcgcattgtat
gacaacccgctggcttgtgactgccgcttgctctgggttttccgacgccgctggaggctc
aacttcaaccgccagcaaccgacttgctcctcacccgagttcgttcaaggaaaagagttc
aaggactttcctgacgtgcttcagcccaattacttcacgtgtcgcaagtcaaggattcgg
gaccggaagccacagcaaaagtttgttgacgaaggcaccaccatccacttcgtgtgtcaa
gcagatggagacccaacgcccgtcatcatgtggctttccccacaaaaacagttcatcacc
atgaaaacgataggacggctcactgttttcccagatggcaccctggaggtgcgctacgct
cagattcaggacaacgggacatatgtgtgcattgctagcaacgccggtggaaacgacacc
gctttggcccacctgcatgtccacagttactcgccagactggcccaaccaacccaacaaa
accttggcgtttatctctaaccaacccaacgacaacggagccaatggaacaagagcaact
gtcccgttcccgtttgatataaagacactaatcatcgccaccactatgggcttcatctcc
tttttgggtgtggttctgttctgcctggttctgctctttctttggagcagaggcaaagga
aacagcaaacacaacattgagatagagtacgtcccgcgcaaatcggacgctgggatgagc
agcagcggcaacgccgatgcccctcgaaaatttaacatgaaaatgatataa
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