Pimephales promelas (fathead minnow): 120477920
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Entry
120477920 CDS
T08155
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120477920 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pprm04091
]
120477920 (frem1a)
Lectins [BR:
pprm04091
]
C-Type lectins
Lecticans
120477920 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
MBD
Motif
Other DBs
NCBI-GeneID:
120477920
NCBI-ProteinID:
XP_039525784
LinkDB
All DBs
Position
Unknown
AA seq
2162 aa
AA seq
DB search
MTAIDWAYLPFLMLGLLHQIQGSLVKTNLGLKVKRGQSVFLQEGDLQFHIPRDKDACKLE
VVLNEPITQRVGTLSPQVFDCHFLADEVKYTHNGCPILKEDTVKLRLYRFTETETYSELF
SLSVEIMEPDCNVIRFGSQSLEVPEFYGLSNILDGNVVSFHYENRHNIECTVQMTTLETH
LPVHGQLVTGEPEKPEGPRGDEPDSFVSLRRQLDNKARAHCKSDDCLKGLKLLKIIKVPC
NDFLMMGIRYHHIDPPSPDIDYIAIRLDLIDTRSRSIIQSEQAWIPVTIKDAMPNQPPKP
AFMSMFILEVDQFILTPLSTATLDAEDDETPKQRLVFNITKPPNEGFITHLSDHTKPIFS
FSWMDLNDMLISYQPPNSSHTQRRNYEVEFEVHDFYFEKSQPVMVHVSIRTAETNAPRVS
WNMGLSLLEGQSRPITWDQLQIVDNDNLKAVRIITVDGLQHGRLTVRGGKGFMFTVKDVK
DGAVHYHHDDSDTTKDFIVFRITDGLHQTRHKFPINILPKDDSPPFLITNMVLELSEGQT
GLLRGSILQACDMDSSDDYIMFNITRPPQAGEIMKMPGPEITGYPVTRFLQKDLFHSIIY
YRHSGSEVFDDSFEVVLSDFHDPPNLSEPQVIVIQIQPVPDQPPQEAPGVARHLVVNETD
VTYLTKQQLHFVDLESPDSELTYTVTTPPFYSTTYGGSDAGRLFLVDSIPKFKKDPNAPM
LRLFTQNAVNYMKVAYMPPILDIGPYPQHIQFILSVTNQQGSMTAGICFNITILPVDNLA
PEVHVRQLTVDEGGESWVSEEHVRLKDQDSLEDSLHVELKKKPQHGSIYLDGTAMSPGQT
FTVRDLKSLKVRYRHDSSETEHDDIKFIATDGINIADFELHVKVTPVNDEAPVLVPGLKP
VLACAEGQEVVITIEYICATDPDSDDSTLMYMIARQPYHGVVQRNDIVVDRFIQADVTAG
LISYRHTGHEIGLQPRHDIVTFVISDGESGLLPSCCSDKATIFSAQTPEIQNSLPVYDLN
ITVYPVNNQPPSIAVGEVFVVNEGGSASITVTYLRVEDQDSAPEDLKLILVAPPQFGYIE
NILPSPGFEKSNMGISIASFTYRDVLNGHINYVQSRHQRMEPTTDQIMLHVSDGKQQSSS
VPFYIIISPTNDEIPDFLARNITVREGDMKELDPSIISAVDLDVPRDRLMFSIVQQPRHG
SIMSVPHGNDVTHYKRGSEIPVEHFTMEDLRSGMTLMYMHDDSESEQDGFIVQLSDGKHK
LKKHVQVNVLPVNDEEPQIIRNIGLEMEAGESRLISSAVLSAHDKDTSSSDIIYVFESIP
SHGVIQMKVGTDWVSVSAGMNCSQQVLDMNLLRYLHTSHPGAPAADFFVFHLLDGKNRSP
AQHFHITVKELEKGDIALFLKPVRSSRGERVVLTTDVLLAVDGTDKPEELLYVITVPPAH
GHLEYIKHTGVQIQSFSQLDVAANLVCYVHDNRATSPRETLQFVVSNGISTRNGTLEILV
EMTDKVLPTLVHNTGLRVPQGSTITLTPDALFLSDPDSPHTALSYRVVHPPLYGQLLLKG
QTLVAGSSFTQQNIQDLDVSYRHSGGASQIDRFRFTASDSTERGFLLDGHLQTEPLFFTL
QIEALDSSAPQIAVLETLWKVELLKDGRYGIFISSRELKAQDKNSADGDLIYHILRPPYF
GYLENYTNGEFVRHRFSQRDLNRRNILYVINSALDSLTDSLEFAVSDALGKSGLSHKLEF
SWASVELTRTEYIICESQGSVSLTIQRKGNVQDSSYVTVQVKELTASAGKDFIPASSLIQ
FDPGMVSRGWRVEIVQDSLEEGDETFEVTLISPMGAMLKDKSKATIFIKDTNGQCRENRI
KAGTSIQGQEDEPGPYPQHGSIQVETLPFSQGYIRGDGDITAEAPSTTKKTLRVIGNGKV
IQPSEMIRHGSDVIYKYHGMVSMAVEDDADSRTDRKAQVQVTSRGQHHAPALRTKLQQTG
RVLQPSGTRPSSKPCTPELSGFLHYNDSSGQMFHCNGVSWRPWTPTNETVKAQKCPRGWT
YHNDFCYILSTERKATWSTAVRACRESFNGNLVSVLSKRDMDWLWDFSERKPFWIGLNDR
ESKGRWEWVGGEPVTYTNWRRSPPKNRKKGSRKCVLVWRKTKWQIRDCKKGKGHRYVCYV
KM
NT seq
6489 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaatagactgggcatatttgccttttctaatgctgggacttctccaccagatt
cagggctctctggtaaaaaccaatcttggtcttaaggtaaagaggggacagtcagtcttt
ctgcaggagggggatttgcagtttcatatacccagagacaaggatgcctgcaagctggaa
gttgtgctgaacgagcccattacacagcgggtcggcacactgtccccacaggtttttgac
tgtcactttttggctgatgaagtaaaatacactcataatggatgtccgattttaaaagag
gatactgttaaacttcgtctgtacagatttacagagacagagacctacagtgagctgttc
tctctcagtgttgaaatcatggagcctgactgtaatgtgatcaggttcggatcacagagt
ctcgaggtgccagagttttatggcctctccaatatcctagacggtaatgttgtgtctttc
cactatgaaaaccggcacaatattgagtgcacagttcagatgacaactttggagacacat
ctacctgttcacggtcaactagtcaccggggaaccggagaaaccagagggaccgagagga
gatgaaccagatagctttgtttctcttcgaagacagctggataataaagctcgagctcat
tgtaaaagtgacgactgtctaaagggtcttaaactgctgaagatcatcaaagtaccatgc
aatgatttcctcatgatgggcatccgctaccaccacatagaccctccatctccagacata
gattacatcgcaattagactggatctcatagacactcgtagcagaagcataattcagtca
gagcaggcctggatcccggtaaccattaaagacgcgatgcccaaccagccgcccaagcct
gcctttatgtccatgttcatcttagaggtggaccagttcattctgactcctctctccacc
gcaactctggatgcggaggatgatgagacgcccaaacagaggctggtgttcaacattact
aaaccccctaatgagggcttcattactcatctgtctgatcacaccaaacccattttctcc
ttctcctggatggatctcaacgacatgctgatcagctaccagcctccaaactccagtcac
acgcagcgtaggaactatgaggtggagtttgaggtgcatgatttctactttgagaaaagc
cagcctgtgatggtgcatgtgtcaatcaggacagctgaaaccaatgcaccaagagtatca
tggaacatgggcctcagtctgttggaaggtcaatcccgtccaatcacatgggatcagctg
cagattgttgacaatgacaacctgaaggctgtgaggatcatcactgtggatggcctgcag
cacggcagactaactgttagaggtggaaaaggtttcatgttcacggtgaaggatgttaag
gatggtgcggtacactaccatcatgatgacagtgacactactaaagattttatagttttc
cggattactgatggtttacatcaaactagacacaagtttccaatcaacatcctgcccaaa
gatgacagtccacccttcctcattaccaatatggtgctggagctgtctgaaggtcaaacg
ggtcttttgagaggatccattttgcaagcttgtgatatggactcaagtgacgactacatc
atgttcaacatcaccagacctcctcaggcaggggaaatcatgaagatgcctggtcctgag
ataacaggataccctgttacccgttttcttcagaaggacctcttccattccatcatctac
tatcggcactcaggcagtgaggtgtttgatgactcttttgaggtggtgctctctgatttt
catgaccctcctaatctttcagagcctcaggtcattgtgatccaaatccagccagtccct
gatcagcctccacaagaggcaccgggtgtggccaggcacttggttgtcaatgagactgat
gtcacctacttgaccaagcaacagctgcactttgttgacttggagtcaccagatagtgag
ctcacatacaccgtaaccaccccacctttctacagcaccacctatggagggtctgatgca
ggaaggttgtttctggttgatagcatcccaaaatttaaaaaggacccaaatgccccgatg
ctgagacttttcactcagaatgcagtcaactacatgaaagttgcttacatgcctcccatc
ctggacattggaccctaccctcagcacatccagtttatcctgtcggtgaccaaccagcaa
ggcagcatgaccgctggaatctgcttcaacattacgattctgccagtggataacctggca
ccagaggtacatgtgagacagctgacggtggatgagggtggagagagctgggtgagtgaa
gaacacgtgcgtctaaaggaccaggactcgcttgaggactcgctgcacgtggagctgaag
aagaaaccccagcatggcagtatttacctggatggcacagctatgagtccaggccagact
ttcacagtcagggatctgaaaagcctaaaagttagatatcgccatgacagctctgagaca
gaacatgatgatattaaattcattgccactgatgggataaatattgctgactttgaacta
catgtcaaggtgacgccagtcaatgatgaggcgccagtgctagtgccaggtttgaaaccc
gttttagcctgtgcagagggacaggaagtggtcatcaccattgagtacatctgtgccaca
gatcctgacagtgatgacagcacattgatgtacatgatcgcccgacagccatatcatggg
gtagttcaaagaaatgacatcgtggttgaccgcttcattcaagcagatgtaactgctggc
ttaatttcctatagacacacaggacacgagattgggctacaaccacgtcatgacattgtc
acgtttgtgatctctgatggagaatcagggctacttccttcctgttgcagtgacaaagcc
actatattcagtgcacaaacacctgaaatacagaattcccttcctgtctatgaccttaat
atcaccgtttatcctgtgaacaaccaaccaccatctattgctgttggagaggtgtttgtg
gtgaatgaaggagggtcagcttctatcacggtgacctatctgagagttgaagaccaagac
tctgctccagaagatcttaagctcatcctggttgctcctccacagtttggctacatagag
aacatcctgcccagtccaggatttgaaaagagcaacatgggaatcagtatcgcctctttc
acctacagggatgtgttgaatggacacattaactatgttcagtctagacaccagaggatg
gaaccgaccactgaccagatcatgctgcatgtgtccgatgggaaacagcagtcctcttca
gtcccgttctacatcatcatcagtccgaccaatgatgagattccagacttcctggccaga
aacatcacggttcgggagggagacatgaaagagttggacccatctataatcagtgcagtg
gatcttgatgttcccagagaccgtttaatgttcagcatagtccagcagcctcggcacggc
tccatcatgagtgtcccacacggcaatgatgtgacgcattacaagcgtggatctgagatc
cctgtggagcacttcactatggaagacctcaggagtggcatgactctgatgtacatgcac
gatgactctgagagtgagcaggacggatttattgttcagctctctgacggaaaacacaag
ctcaagaaacacgtacaggttaacgtactgcctgtcaatgatgaggaaccacaaattata
cggaacattggccttgagatggaggctggggagtccagactgatctccagtgctgtgctt
agtgctcatgacaaagacacttcttcttctgacatcatctatgtgtttgagagcataccg
agtcatggtgtcattcagatgaaggtcggcacagactgggtgtctgtatctgcaggaatg
aactgctctcagcaggttttggatatgaacctgttacggtaccttcacaccagtcatcct
ggagcacccgctgccgacttctttgtcttccacctgttggacggcaagaaccgctctcct
gctcagcacttccacattacagtcaaagaactggagaaaggagacatagcattgttcctg
aagcctgtgaggtctagtcgaggggagcgtgtggttctcaccacagacgtcttgctggcg
gtagacggcactgacaagccggaggagctgctctatgtcatcactgtacctccagcacat
ggtcatttggagtacatcaaacacaccggcgtgcaaattcagtcgttcagtcagctggac
gtagcagcaaacctggtgtgttatgtacatgacaacagagccacttcaccaagagagacc
ctgcagtttgtggtcagcaatggcatatcaactcgcaacgggaccctggagatcttagtg
gaaatgactgataaggttctgcccacactagtgcataacactggtctacgggttccccag
gggtccaccataactttgacacctgatgccttattcctgtctgatcctgacagtccacac
actgccttgagctacagggtggtccaccctcccctgtatggccagttgcttttgaaggga
cagacactggtcgctggtagcagttttacccagcagaacattcaggatctggatgtttca
tacagacactctggaggagcttctcagatcgatcgcttcagattcacggcctctgacagc
acagaaagaggctttctgttggacggacacttgcaaactgagccgctcttcttcactctg
caaattgaagctctcgacagctcagctccacagatagcagtgttggaaaccctatggaaa
gtggagcttctcaaagatggtcgttatgggatctttatttcctccagagagcttaaggct
caggataagaactctgcagacggtgatctgatctatcacatcctcagaccgccttatttt
ggatacctggaaaattataccaatggtgagtttgtgaggcatcgtttctctcagagggat
ctgaacagaaggaatatcctctacgtcataaactctgctctggactctttaactgacagc
ctggagtttgccgtgtctgatgcactgggcaaatctggactttctcacaaattggagttt
agctgggccagtgtggagctgaccaggactgagtatatcatatgtgagagtcaggggtca
gtctcactaaccatccagaggaaggggaatgtgcaggactcatcttatgtgactgtacag
gtgaaagaactaacagcatctgctggaaaggattttataccggcttcatctttgattcag
tttgacccagggatggtcagtcgaggatggagagtggagattgttcaggactctttagag
gaaggtgatgagacatttgaggttaccttgatatctccgatgggtgcaatgctgaaagac
aaatctaaagccaccatcttcataaaggacacaaatgggcagtgcagagagaaccgaatc
aaagcaggaactagtattcaaggccaggaggatgagccaggtccgtaccctcaacacggc
tccatccaggtggagacattacctttctctcagggatatatcagaggggatggagatata
acagctgaagctccctccactacaaagaaaacactcagagtcattgggaatggaaaagtg
attcagccttcggaaatgattcgtcatggatctgatgtcatttacaaatatcacggtatg
gtatcgatggcggtggaggacgacgctgactccaggactgacagaaaggcacaggtgcag
gtgaccagcagggggcagcatcacgctcctgcgctcaggacaaaactacagcaaactggc
agagttctgcagccttctgggactcggccttcttctaaaccctgtactccagagctcagt
ggcttcctccactacaacgacagctcaggtcagatgtttcactgtaatggagtctcctgg
aggccctggacacctactaatgagactgtgaaagcacagaaatgtcctcgaggatggacg
taccacaacgacttctgctatattctgagcacagagcgcaaagccacgtggagcaccgcg
gtacgggcctgcagagaaagcttcaatggaaacctggtcagtgttttgtcaaaacgagac
atggactggctgtgggacttcagtgaaagaaaacccttttggattggtctgaacgaccgt
gaaagtaaaggccgctgggagtgggtgggtggagagccggtcacttacaccaactggagg
cggagccctccaaaaaacaggaagaagggaagcaggaagtgtgtcctggtctggaggaag
acgaaatggcagatacgagactgtaagaaaggaaagggacaccgttatgtgtgttatgtt
aaaatgtaa
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