Pimephales promelas (fathead minnow): 120477928
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Entry
120477928 CDS
T08155
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120477928 (pms1)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120477928 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HMG_WDHD1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120477928
NCBI-ProteinID:
XP_039525796
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MKALPPETVRLLCSSQVITSVLNVVKELTENSLDAGSSSLEVKLENYGLDRIEVRDNGSG
IKATDVPVMAVQHYTSKISCHEDLEHLESYGFRGEALASICAISEVVITTKTADDDFSIQ
YSVDRNGQIVSQKPSHLGVGTSVCAANLFKNLPVRRQYYSNTKKCKEDLKRVQNLLMAYA
VIKPELRITLSHNKAVVWQKSRVSDHRTALMAVLGAASVANMLPVRHHQEQPEIGIDGFL
PKPGSDLNSTSSYTPDKTFIFVNSRPVHAKEILKLIKQYYASAQSNSESANRRYPFLMMN
ITIPASTVDVNLTPDKTEVMLQNKEEVLLAVEAMLISLYGCSTGDDNLKKGGNRPNASYV
DVTEHANAVVPTPITDISLNNPELLEHSSTNADKQDGELSLNNTANTSSSSISEDWVINR
SSSDFDSINSSLPADDVVMNSTADLNCNSPKATKSDSGPGQESEISAESWSTGRAFSNQI
TRECLKPVKLHVPKANEDVGGTEPTSTSKRPSNVIMEKMAKLTAYELISNRSVRQPLSDF
SLFEQDTRSQVLQENPRASPQDVTTAVKERWESLGEEDRKKYESKAEKSLNAYNLQRKRA
TEGGGQCGEGKKQMSAESSLNKAQGVKRKAPLANQQALDKLFSSQPSSKRSLAKLSKPHP
FSIATLKQSLNLLSYQNSSSAQGLRLVNRLASHGAWVVLCGRKLMLLNPFRVEEALLFKR
LLKNNILPTVRQQTPVPLTDGLLGGPEYMDVLLDMEKDSPCFNGHIYFTDPRLVANGFEI
RMIPGSSSSERHVEVTGMADCMPFFGIGDLREILQAIKVRDAKTVEQCRPLKVSNYLESE
AVRLARQLPLNLSRADVTNTLYRMKHELEEESQVCIHGRPFFHDLVTVPETEQEALQIMS
SSC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgcttccacctgagactgtgcgtctgttgtgcagctctcaggttataacatct
gtcctgaatgttgtcaaggaactgactgaaaattcacttgatgctggttcttcaagcctt
gaagttaaactggagaattatggattggatcgcattgaagtcagagacaatggttctgga
atcaaagctactgatgttcccgtgatggctgtacaacactacacatctaaaatctcctgc
cacgaagacctggagcacctagagtcttacggcttcagaggagaagctctggcatctata
tgcgctatctcagaggtcgtcatcactaccaaaaccgcagatgatgattttagcattcag
tattcagtcgatcgcaacggacagatcgtctctcaaaagccatcacatcttggcgtgggc
accagtgtgtgtgcagcaaacctattcaagaacctccctgtcagacggcagtattattcc
aacactaagaaatgcaaagaggacctgaagagagtccagaacttactcatggcctatgct
gttattaagcctgagttaaggatcacgttgagccacaacaaggctgtggtctggcagaaa
tccagggtgtcggatcaccgaactgccctcatggccgtgctcggagcggcctccgtagcc
aacatgctccccgtccggcatcaccaggagcaaccagagatcggcatcgatggatttctt
cccaaaccgggctcagatttgaattccaccagctcctatacacctgataaaacattcatc
tttgtaaatagtcgacctgtgcacgccaaagaaatacttaagcttatcaagcaatactat
gccagtgctcaatcgaattctgaatctgcaaaccgccgatatccctttttaatgatgaac
atcaccatacccgcctcgacggtggacgttaacctgacacctgataaaaccgaagtgatg
ctacagaataaggaagaggtgctgttggcggtggaggctatgttaatctccttgtacggc
tgctccactggcgatgataatctcaaaaaaggaggaaatcggcccaatgctagttatgtg
gatgtaactgaacatgctaatgcagttgttcctacacctatcacagatattagtttgaac
aacccagaattgcttgagcattcttccacgaatgcagataaacaagatggtgagctatcc
ttgaacaacaccgcaaacaccagctcctcttcgatttcagaggattgggtgatcaacaga
agctcaagtgattttgacagtattaattcctcattacctgctgacgatgttgtaatgaac
tctacagctgatcttaactgtaactccccaaaggcgactaagagtgatagtggccctggt
caagaaagcgaaatatctgctgagagctggagcacaggcagggccttctcgaatcaaatc
accagagaatgcctgaaacctgtgaaactccacgtcccaaaagcaaatgaagacgtcggt
ggaactgagcccacaagtacgtccaagaggccctccaacgtgattatggagaaaatggcc
aagctcacagcctacgagctgatcagcaaccgctctgtgcgtcagcccttgtctgacttt
tcactgtttgagcaagacaccagatcgcaggtccttcaggagaacccaagagccagtcct
caggatgtcacaactgctgtgaaagagagatgggaaagccttggggaggaagaccgcaag
aagtatgaaagcaaggcagaaaagtctctgaacgcctacaaccttcaaaggaagagggca
acggagggaggtggccagtgcggagagggcaagaagcagatgagcgcagagtcttcattg
aacaaagctcaaggcgtgaagcgcaaggcccccctcgccaaccagcaggccctggacaaa
ctcttctcctctcagccctcgagtaagaggagccttgccaagctctccaaaccccacccg
ttcagtatcgcaaccctcaagcagagtcttaacctcctctcctaccagaacagctcaagt
gcacagggcctcaggcttgtaaaccgcttggcttctcacggtgcctgggttgttttatgc
ggcagaaagctcatgttgttgaacccttttcgagtggaggaggccttgctgtttaaaaga
cttctgaagaataatatacttccaaccgtgaggcagcagacccctgtaccgctgacagat
gggttgcttggtggtccagaatacatggatgttctcctggacatggagaaagacagtccc
tgctttaatggacacatttactttactgatcctaggctcgtggcgaatggttttgagatt
aggatgattccaggctcctcgtcttctgagaggcatgttgaagtgacgggcatggccgac
tgcatgcctttcttcgggataggagacctgagggaaattctgcaggctataaaggtccgg
gatgcaaaaaccgtggagcaatgtagacctctcaaagtctcaaactacctagagagtgag
gcagtgagactagctagacagttacctctaaacctctccagagctgatgttacaaacacg
ctttaccgaatgaaacatgaacttgaagaggaaagtcaggtctgcattcacggacgacct
ttttttcacgacctggtgaccgttcctgaaaccgagcaggaagctctgcaaatcatgtct
agttcttgctaa
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