Pimephales promelas (fathead minnow): 120478150
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Entry
120478150 CDS
T08155
Symbol
trim35-39
Name
(RefSeq) tripartite motif containing 35-39
KO
K12012
tripartite motif-containing protein 35
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120478150 (trim35-39)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120478150 (trim35-39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-Nse
U-box
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
120478150
NCBI-ProteinID:
XP_039525881
LinkDB
All DBs
Position
Unknown
AA seq
389 aa
AA seq
DB search
MDSLSAKEMSCPICCEIFKAPVLLSCSHSFCKECLQQFWSSRNTRECPVCRRRSSRDDPP
CNLVLRNLCESFVKRRNEKGSSAGSEEVCSLHSEKLKLFCLDDKQPVCLVCRDSHKHVKH
TFRPISEVVSSYKEELRLLQEKLKHMEKIKGECVKTIQHIKSPELTAGYTHGIWSFDSCG
ALLRQPAVQSLEEGAKHCPKHIHIGTVSLTVAHSPQTLCSSTLCRVKAPVILDPNTAHPD
LLLSDDLTSLRCSSNSQTLPDNPERFDEHSCVLGSEGFDSGTHCWDVEVKESSSWALGVT
AASNQRKGCDFFDTGVWSVQYRLFEESGFPVEQKLERVRVQLDFERGTVSFSDSLSNTHL
HTFTTSFTETVFPFFYSFSHLRILQLNCL
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggattcactctctgcaaaggaaatgtcgtgtccaatttgctgtgaaatcttcaaggct
cccgttcttctgtcatgtagtcacagtttctgtaaagagtgtcttcaacagttttggagt
agcaggaacactagggagtgtccagtctgcaggagaaggtcgtcacgagatgatcctcca
tgtaatcttgtgttaagaaacttgtgcgagtccttcgtgaagaggagaaatgagaagggt
tcatctgcagggtccgaggaggtctgcagtttacacagtgagaaactcaaactcttctgt
ctggatgacaaacagcctgtgtgtttagtgtgtagagattcacataaacatgtcaagcac
acattcagacccatcagtgaagttgtttcatcttataaggaggagctgaggttattacaa
gagaaacttaaacacatggagaaaattaaaggggagtgtgtgaaaacaattcaacacatc
aagagtccagagctcacagccggatacacacatggcatctggagctttgattcatgtggc
gcgttacttaggcaacctgccgttcagagtctggaagaaggcgcaaaacattgtccaaaa
catatccacatcggcacagtgtctctgacagttgctcactctcctcaaacattgtgttca
tccacgctgtgccgtgtcaaggctcctgtgattctggatccaaatacagctcatccagat
ctcctcttgtctgatgatctgaccagtctgagatgcagttcaaacagtcaaacacttcct
gacaatccagagagattcgacgagcattcctgcgttctgggttcagaggggtttgactcg
gggacacactgctgggacgtggaggttaaagagagctcgtcctgggctctgggagtaact
gcggcatcgaaccagaggaagggatgcgatttctttgacactggtgtgtggagtgtgcag
tacagactgttcgaagagtctggttttcctgtggaacagaagcttgagcgggtgagagtt
cagctggactttgaaagaggaacggtttcattctccgattctctatctaacacacatcta
cacacgttcaccaccagcttcactgagaccgtcttcccattcttctatagcttttcccat
ctgaggatcttacagttaaattgtttgtaa
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