Pimephales promelas (fathead minnow): 120478610
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Entry
120478610 CDS
T08155
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04137
Mitophagy - animal
pprm04140
Autophagy - animal
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120478610 (hif1al)
04137 Mitophagy - animal
120478610 (hif1al)
04148 Efferocytosis
120478610 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120478610 (hif1al)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120478610 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
TLP-20
FAM176
Motif
Other DBs
NCBI-GeneID:
120478610
NCBI-ProteinID:
XP_039526494
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All DBs
Position
Unknown
AA seq
640 aa
AA seq
DB search
MVNSAMKRPSLEQRKVRSRDAARSRRSQETEVFYELAHSLPLPRRVASHLDKAAIMRVAL
SYLRMNRLIQTAGPTETKTEETENPTDGFYQQALAGFILVMTEEGDMIFLSESVSKYIGI
TQLELLGQSVYEFVHPCDQEELRDILTTIPGISKKKTEKSAEQNFFLRMKSTLTHTGRTV
NIKSANWKVLHCTGHMQTFSGDDSLPAGSFLTLLCEPIPHPSSVEFPLDSSTFLTRHNMD
LTFTQCDGRVTELVGYHPEDLIGQSAYEFFHALDFDHVTRSLNILFTKGQVCTSHYRFLA
KNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEEADVVFSLEQTCEKPKPKTKRLS
EMMEEEEEEDKEEEKEDSDMEESSTAELFLQMKENPEELLQLAPHSGDAIISLTECVELS
FCRPASPNSIPECPQELCTPELRQLLSPIFDVQPSNSPPAASPAEELPMEMEVVQKLFTL
KPEESVTLKGQSEAMDELDLDMLAPYISMDDDFQLTFLPQSEMAASSEKITNTSRKRCLE
DEEEDDIPVLAAKWEKKQLSSSIEEQLLLSHTLLNDLSDDPSEEFEPPPQKRSQLLTDRD
PLLGGVQALCDTAALMRGTFLSRPPDLTRSPVAETMAFLT
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactctgcgatgaaaaggcccagtttggagcagcggaaggtgcgttctcgtgac
gcggcgcgcagtaggaggagtcaggagactgaggtgttttacgagttggcacactcgcta
ccccttccacgacgtgtcgcctcccacctggacaaagctgccatcatgagggtggcgctc
agctatttgcgcatgaaccgcttgatccaaaccgcggggccaacagaaacgaagacggag
gaaacggagaatcccactgatggcttttatcagcaggcactggctggctttattctggtg
atgaccgaggaaggggacatgatcttcctctcagagagtgtcagcaaatacatcggcata
acacagctggagctgcttggacagagtgtgtatgagtttgttcacccctgtgaccaagaa
gaattgcgagacatcctcaccacaataccaggtatttcaaagaaaaagacagagaagtca
gctgagcaaaatttcttccttcggatgaagagcacactcacccacacaggaagaacagtt
aatatcaagtctgcaaactggaaggtccttcattgcacaggacacatgcagacgttcagt
ggtgatgactcgctccctgctggcagcttcctgacattgctgtgcgagcccattcctcac
ccttccagcgttgagttcccactggacagcagcactttcctcacacgccataacatggac
ctgactttcacgcagtgtgacggacgagtcactgagcttgttggataccaccctgaggat
ctgattggccagtctgcttatgagttttttcacgcccttgattttgaccatgtgaccagg
agtttaaacatcttgttcaccaagggccaggtgtgcaccagccattaccggtttctggct
aagaatggaggatttgtctggactgagactcaagccactgtcctctacaacagcaggacg
tctcaacccgaggctgtggtctgcctcaactttatcctcagtggcgtggaagaggcagat
gttgtgttctcattggaacagacctgtgagaaaccaaagcccaaaactaagaggctgagt
gagatgatggaggaggaggaggaggaggataaggaggaagagaaagaggactccgacatg
gaggagagcagcactgcagagcttttcctccagatgaaggagaacccagaggagttactg
cagctggcacctcactctggagatgctatcatttccctaacagagtgtgtggagttgtcc
ttctgccgtccagctagtcccaacagtatcccagaatgccctcaggaactctgtacaccc
gaactccgccagctcctttctccgatattcgacgttcagccctccaactctccacctgct
gcaagccccgctgaagagctgcccatggagatggaagtggtacagaagttattcaccctc
aaacctgaagagagcgtaactctgaaaggacagtcagaggctatggatgagctcgatttg
gacatgctagctccatatatctccatggatgatgacttccagttgaccttcctgccccag
agtgaaatggctgcatcttcagaaaagataacaaacacttcaaggaaacgatgtttagaa
gatgaggaggaagatgacattcctgttctggctgccaaatgggagaagaaacagttgagc
agctccatagaggaacagttgctgctcagccacacattactgaatgacttgtccgatgat
ccttcggaagaattcgaaccgccacctcaaaagcgaagtcagcttttgaccgacagggac
ccgttactgggcggagtgcaggcgttgtgtgatacagcagctctcatgagaggcaccttc
ctgtcacgcccacctgacttaacacgctcacctgttgctgaaacaatggcgttccttact
tga
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