Pimephales promelas (fathead minnow): 120478669
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Entry
120478669 CDS
T08155
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03030
DNA replication
pprm03420
Nucleotide excision repair
pprm03430
Mismatch repair
pprm03440
Homologous recombination
pprm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120478669 (rpa1)
03420 Nucleotide excision repair
120478669 (rpa1)
03430 Mismatch repair
120478669 (rpa1)
03440 Homologous recombination
120478669 (rpa1)
03460 Fanconi anemia pathway
120478669 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120478669 (rpa1)
03032 DNA replication proteins [BR:
pprm03032
]
120478669 (rpa1)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120478669 (rpa1)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120478669 (rpa1)
DNA replication proteins [BR:
pprm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120478669 (rpa1)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120478669 (rpa1)
MMR (mismatch excision repair)
120478669 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
120478669 (rpa1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
120478669
NCBI-ProteinID:
XP_039526601
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MTVILSEGAIESLTKGVEVSNPVLQCVNIRKIDGGNGLSRFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLASNCVCMLKRSVTNVLKDGRRVVVILDMEVLKPADQMPGKIGDPTPYVEG
QSRAQQSTAPAPAPSVRPLQPQNGSEGSMNRPPAQSFGKKPMAAPNTPGGSSKVVPIAGL
NPYQSKWTVRARVTNKSAIRTWSNSRGEGKLFSMELVDESGEIRATGFNNEVDKFYSLIE
QGKVYFISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSQDVPMLQCEFISIADLES
REKDTIVDVIGVCKNTEDVTRIVTKTSREVSKRNIQLMDMSGRVIQLTMWGNDAETFDGS
GQPILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELR
GPGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQ
QNGMYRCEKCDKEFPDFKYRLMLSANVADFGDNQWVTCFQDTAEILLGQNSSYLGQLKDS
NEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRKM
AAQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgactgttatactgtcagaaggggcgattgagtccctgactaaaggagtggaagtcagc
aaccctgttcttcaatgtgtgaacatccgcaagattgatgggggaaatggcttgtcccgt
ttccgtctcatgatgagtgatgggctgcacactatgtcctcattcatgctctccacacag
ctcaatcccatggctgagcaaaaccagttggcctctaactgtgtgtgtatgctgaaaagg
agcgtcactaatgttctcaaggatggacgacgtgtggtggttatactggacatggaagta
ctcaagcctgccgaccagatgccaggaaaaattggagacccaactccttatgtagaaggt
cagtcaagggcacaacagagtacagctccagctccagctccatctgtacgtccattgcag
cctcagaatggaagtgaaggttcaatgaacagacctccagctcagagcttcgggaaaaag
cccatggctgcccccaacacccccggaggcagctctaaagttgtgcctattgcaggcctg
aatccataccagtcaaagtggactgtcagagctcgggtcaccaacaagagtgctatccgc
acatggagtaactccaggggagaagggaagcttttctccatggagctagtggatgaaagc
ggggagatcagagcaactgggtttaataacgaggtggataaattctactcgctcatcgag
cagggaaaagtctacttcatctccaaaggcaccctgaagatcgctaacaaacagttctct
tcacttaagaatgactatgagatgactctcaatggagagacaagtatcatcccttgtgag
gacagccaggatgtccccatgctgcagtgcgagtttatttccattgctgacctggagtcc
cgggagaaagacaccattgtagatgtgatcggagtatgtaaaaacacagaagatgtgacg
cgcatcgtgaccaagaccagtcgtgaggtttccaagagaaacatccaattgatggacatg
tccggcagagtcatccagctcaccatgtggggcaatgatgcagagacatttgatggtagt
gggcagccaatcttggccattaagggggcaagattatctgactttggtgggcgttctctc
tcaactctctacagcagcacagtcatgatcaaccccgatattcctgaggcatacaaactg
cggggctggtatgataaggaaggacatgctttggatggacagtcgatgactgaattgaga
ggacctggtggtggaaacacaaactggaagaccctggcagaagtcaagaatgagcactta
ggccatggagacaaagctgattatttctcttgcatcgccaccatagtctacatccgaaaa
gagaactgcttgtatcaggcctgtcccagtaaagactgcaacaagaaggtggtggaccag
cagaatggcatgtaccgctgtgagaaatgcgacaaagagttcccagacttcaaataccgc
ctcatgctctcggccaacgtcgctgattttggagacaaccaatgggtgacttgctttcag
gacactgctgagattcttctgggccaaaactcaagttatctcggccaactcaaggactct
aacgaagctgcatttgacgaggtctttcagcatgcaaacttcaatacttttgtcttccgg
aaccgagtgaagctggagacctacaatgatgaatctcgcatcaaagtgacagtggtggat
gccaagcctgtagaccaccgagaatacagcaaacggctgatcatcaacataaggaagatg
gctgcacagtag
DBGET
integrated database retrieval system
