Pimephales promelas (fathead minnow): 120478702
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Entry
120478702 CDS
T08155
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03022
Basal transcription factors
pprm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120478702 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
120478702 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120478702 (ercc2)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120478702 (ercc2)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120478702 (ercc2)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120478702 (ercc2)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120478702 (ercc2)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120478702 (ercc2)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120478702 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
120478702
NCBI-ProteinID:
XP_039526682
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYTKQTGAKNDFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQHHSNPSQPVCQFYEEFDSVGRQVPIPPGIYNLDDL
KDFGRRKGWCPYFLARYSILHANIVVYSYHYLLDPKIADVVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVETLQNTISKIKETDAAKLREEYRRLVEGLKEANVARE
TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRLLEYLKARLRIHHVVQESAPQFLKD
IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISHFATLVSTYSKGFTIIIEP
FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQSVIITSGTLSPLDIYPRILDFRPVTVAC
FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYIYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLREQFQIRENDFLTFDAMRHA
AQCVGRVIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTTDETVQLAKHF
LRQMAQPFRQEDQLGLSLLTLEQLQSEDMLQKIAQIAHQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatcgacgggctattagtctattttccttatgactacatttatcccgaa
caatactcgtatatgcttgagctgaagaggacgctggatgcaaagggccatggagttctc
gagatgccctcaggaacaggaaaaactatttctcttctttccctcatcgttgcttaccag
aaggcttaccctttagaagtcaccaagcttgtctactgctctcgcactgtgccagagata
gaaaaggttgtggaagagttaaggaaactaatggactattatacaaagcaaacaggagca
aaaaacgacttcctcgcactggcgctttcttcacggaaaaacctgtgcattcatcctgag
gtgagctctctgcgttttggaaaagaagtagatggaaagtgtcacagtctgacagcatcg
tatattcgagcgcagcatcacagtaacccgagtcaacctgtctgccagttctatgaagaa
tttgattcagttggcagacaagtgcccattccccctggtatatataacttggatgatctg
aaagactttgggcgtagaaagggctggtgtccgtacttcctggcacgttactcaattctt
cacgcaaacatagtagtgtacagctaccattacttactagatccaaaaattgcagacgtg
gtctcgaaagagctcgcaaagaaatctgtagtcgtgttcgacgaggctcacaacatcgat
aatgtgtgtattgactccatgagcgtcaacattaccaggaggacgctggatcgctgccag
actaatgtggaaaccctacaaaacaccattagcaaaattaaggaaacagatgctgccaaa
cttcgagaagaatataggagattagttgagggccttaaagaagcaaatgttgcccgagag
actgacatctacctgtccaatccagttttgcctgatgaaatcctccaagaggctgttcct
ggcagcatccgcacggcagagcactttgtaggctttatgaagcgcctccttgagtacctg
aaggcacgtttgcggatccatcatgtggtgcaggagagtgctcctcagttcctcaaagac
atcttcgagaaggtctgcattgaccgcaaaccccttagattttgtgcagagaggctgcgc
tccctgctgaggacgctggagattgcagacatcgctgacttctcagccattaccctgatc
tcacactttgccacacttgtcagcacctacagtaaaggcttcaccatcatcattgaacca
tttgaagataaaacgccaacaatagcgaatcctgttcttcacttcagttgtatggacccc
tctatcgccataaagccagtgtttggccgttttcagtcggttatcatcacatccgggacg
ctctctccgctggacatctacccacgcatccttgatttccgcccagtaactgtggcttgc
ttcaccatgacactggcacgaacctgcctgtgccctctgattgttggccgagggaatgat
caggtagcaatgacctccaagtttgagaccagagaagattttgctgtgatccggaactat
ggaaacttgctgctggaaatgtctgccattgtccctgacggaattgtagcattcttcaca
agttacatttacatggagaacattgtggcctcctggtatgaacagggaatccttgagaac
atccaaaggaacaagctcattttcatagagacccaggatgcagctgagactagcatggcc
ctggagaagtatcaagaggcctgtgagaacggcagaggagcaattctgctctccgtggca
agaggaaaagtgtccgaagggattgactttgttcaccattttggtcgtgccgttatcatg
tttggagtgccgtatgtttacactcagagccgaatcctcaaggcacggttggaatacctc
agagagcagtttcaaatccgggaaaatgacttcctgacgtttgatgcgatgcggcatgcg
gctcagtgtgtgggtagggtcatccgaggcaaaacagactatggcctgatgatctttgca
gataaacgttacgcacgagcagataagcgaggaaagctgccccgctggatccaggaacac
ctcacagatggaagcctaaatctgaccactgatgagacggtgcagttagccaaacacttt
ctgcgacagatggcacagcccttcagacaggaggatcagttgggtttgtctctgctgacc
ctggaacaattgcagtctgaggatatgctccagaaaattgctcagattgcacatcaagcc
tga
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integrated database retrieval system
