Pimephales promelas (fathead minnow): 120478794
Help
Entry
120478794 CDS
T08155
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04382
Cornified envelope formation
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120478794 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120478794 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120478794 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120478794 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120478794 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120478794 (col4a4)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120478794 (col4a4)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120478794 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120478794
NCBI-ProteinID:
XP_039526859
LinkDB
All DBs
Position
Unknown
AA seq
1666 aa
AA seq
DB search
MTPPRRIASTSLLFCTRLLLALMTIHTALGGDKTEECGGRDCSVCQCFPPKGERGNPGIL
GRQGPIGPPGLPGTPGHPGEKGVRGIIGFPGESGSPGEQGVRGESGHAGSDGVPGHPGPG
GPPGLPGKDGCNGTRGEPGLGGEMGRPGLPGTMGLPGLKGIKGDTSYRITYIPGTPGVGG
LQGVRGPQGFRGDFGPQGPPGQVGPVGSMGIQGSPGPKGQPGDSGRSLPGPKGDEGDQGP
QGDPGPFEYVEPNLEDYVKGDKGEKGQKGICGSPGLDGPEGPPAEKGEKGIIGLPGPRGP
PGFPGRTGFQGPKGRLGENGLPGLFGNPGLKGFPGDPGPKGKPQYNYNYMKGPPGDPGLP
GAAGPPGDRGMIGIPGPLGDSGVSVTGAMGESGLQGLNGQEGEKGDPGRTYGSLLSYGEP
GKRGPPGRKGPQGNPGVPVCGYYCLPGGRGESGQVGERGPFGLPGVQGRKGPDGGCACDP
PGDLPGARGLQGPRGDPGDPGRKGSRGFTGDIGLIGEMGVGGVTGPRGYTGVRGIKGQKG
GVMVSCRKGEKGDSGSAGPCGKPGYNGMNGADGKIGDPGDPGSPGDNLVGLTGDRGCPGD
VGVKGFRGPTGPPGPCMMGSNGRRGQQGDPGPQGQTGPPGPKGIQGDTLPCGPGIIGVPG
YKGMPGFKGGKGTLGNPGFKGKNGPYGPKGENGDPGDFGCSGQKGPNGYLGDPGDTGPDG
NGISGFPGKTGFRGPQGLKGSLGDCVIGAPGPMGQFGVQGSAGPKGVPGPPGPIGLQGTS
GDPGYPGRKGEQGEDGRQGAPGFPGGRPEQCDKGRAGPPGKTGPPGASGQRGTPGEKGSL
GNQGPPGFGVKGDPGKPGFPGIQGYTGLQGPSGLKGDSGNPGFTGPKGLAGFPGLDGYAG
NRGQTGPLGAPGQKGLRGLNGYPGFPGVNGNKGQKGCIGPTGPPGDIISVPVKGRVGPPG
PHGVNGFCGERGQKGDPGPPGPPGYPGRNGPPGFECGVRGPPGIPGSPGEPGTTGRPGPK
GIVGYPGENGDSGDPGLTGVAGTPGFPGLDGPKGDKGESAGEPGPTGERGPCGEKGVSAP
PGDIGDSGDPGSQGPYGNWGPLGPPGNPGHYGSPGVVGPPGQCGRHGPEGVRGLSGPPGP
KGNIGHPGLRGSSGLPGLHGLDGLKGVKGEIGSRGLGIKGDRGNRGLTGDKGDPGEPGLY
GTSKNGIQGPKGPPGYQGDPGPVGPPGFRGEECKILKPGFCGGQGFPGLDGPPGPMGEMG
QPGNVFAVSGDCGGPGVPGPPGCKGEKGCLGPNGLQGYQGPEGPKGERGQCGLMGLPGPG
GPIGDCGPSGPCGAKGEKGDPGPKGEPGDVRRPNPCHPPQGLPGARGLSGPYGDDGKNGD
NGSEGPKGAKGPKGADGFPGPPGPVGSDGPPGNPGNKGVRGPTGSQGPPGPDGDQGPPGN
NKMFSSGFLLVMHSQSEIVPTCPLGLTVLWTGYSLQYMQDHKRGHTQDLGQAGSCVPMFS
TIPFSSCDMHFCNYSSRNEKSYWLSTTASISMAPVRGMEIRPHISRCVVCDASSPAIAIH
SQDLSTPLCPPNWRSLWTGYSFLMYAGSEKKAGEQSLASTGSCLQNFHSQPFMECRGPVG
TCQYFTSSFSFWLTKENMQHFNSNPQSPGQESVSKCNVCMMNDPNN
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgacacccccccgccggatcgcctcgaccagcctccttttctgcacaaggcttttattg
gcacttatgacgatacacactgctttggggggggacaagacagaagagtgcgggggtcga
gactgcagcgtctgccagtgtttccctccaaaaggagagaggggaaatcctggtatctta
ggtcggcagggccccattggccccccaggtttgcctggcaccccaggacatcccggtgag
aagggtgtacgtggtatcataggattccctggggagtctggctcaccaggagagcagggt
gttcgaggagagagcggtcatgctgggtcagatggagtgcctggtcatccggggcctggt
ggtcctcctgggcttccagggaaggatggatgtaatggaaccagaggggaacctgggctg
ggtggtgagatgggacgacccggcctgccaggaaccatgggactacctgggttaaaaggt
atcaaaggggacacctcttataggataacttacattcctggaacacctggtgttggtgga
ttacaaggagtacgtggaccacaaggatttagaggggattttggtcctcaaggtccacca
ggacaagtaggacctgtgggaagtatgggcatacagggttcaccaggtccgaaaggccaa
ccgggagactcgggaagatcactgcctggaccaaaaggagatgaaggggatcaaggtcct
cagggggatccaggtccatttgaatatgtggagcccaacctagaagactatgtgaaaggc
gataagggggaaaagggacaaaaaggaatttgtggaagtcctggccttgacggtccggaa
gggcctccagcagaaaaaggagagaaaggcataattgggttacctggacccagaggccct
cctggatttccaggccgaacaggttttcaaggacccaaggggagacttggggaaaacggt
ctccctggcctatttggcaatccaggactaaagggcttcccaggtgacccaggacctaaa
ggaaagccacagtacaattataactatatgaaaggaccacctggagatcctgggctccct
ggtgccgccgggccacctggtgatagagggatgataggtatacctggtccccttggtgat
tcgggagtctctgtaacaggtgcaatgggtgaatctggtctccagggtctcaatggacag
gaaggagaaaagggtgacccaggaagaacatatgggtcactcttaagctacggggaacct
ggaaaacgaggccctcctggacgtaaaggacctcaaggaaatcctggcgttcctgtttgc
ggttactactgccttcctggaggacgtggagaatctggacaggttggagagagagggcct
tttggattgccaggtgtccaggggagaaaaggtcctgatggaggatgtgcatgtgacccg
cctggtgatctacctggcgctcgtggtctccaaggcccccggggtgaccctggtgatccc
gggcgaaaagggtcccggggtttcactggtgatatcggactcatcggagagatgggtgtg
ggaggtgtgactggtcccagaggctacacgggtgtccgagggattaaaggacagaaagga
ggagttatggtgtcatgcagaaagggagagaaaggtgactcgggatctgctggaccatgt
ggaaagccagggtataatgggatgaacggggctgatgggaagattggcgatcctggagat
cctggatctccgggagataatcttgttggactgacaggcgacaggggatgtccaggagat
gttggtgtgaaaggcttcagaggtccaactggtcctcctggaccatgtatgatggggtca
aatgggcgacgagggcaacaaggggatcctggacctcaaggtcaaacagggccacctggt
cctaaaggaattcaaggtgatacactgccctgtgggcctggcattattggagtccctggt
tacaaaggaatgcctggatttaaaggtgggaaaggtacacttggaaatccaggattcaaa
ggaaagaatggaccatatggtcccaaaggagagaatggagaccctggcgattttgggtgt
agcggacagaaaggtccaaatggatatttaggagatccaggtgacactggccccgacggc
aacggtataagcggctttcctggcaaaactggatttcgtggaccccagggtctgaaaggg
tctttaggagactgtgttattggggctccaggaccgatgggccaatttggggttcaggga
agtgcgggccctaaaggtgtacctggacctcctggaccaattggattgcaaggtacatca
ggtgatcctggatatcctggaagaaaaggggaacaaggagaggatggtagacaaggggca
cctggtttcccaggtgggagaccagaacaatgtgacaaaggacgagctggtccacctggc
aagacaggaccaccaggcgctagtggacagagaggcacccctggagagaaaggatctctt
gggaatcagggacctccaggctttggagttaaaggagaccctggtaagcctggtttccca
ggcattcagggatacacaggccttcagggaccttcaggactcaaaggggacagtggaaat
cctggatttactggaccaaagggtttggctggatttcctggtctagatggctatgctggc
aacagagggcagacgggccctttaggggctcctggacaaaaaggccttaggggtctgaat
ggatatccaggtttcccaggggtaaatggaaacaagggccagaaaggatgcattgggcca
actggacctccaggagacataatttcagtgccagtcaaaggccgggtaggaccacctgga
cctcatggggtgaatggtttctgtggagagaggggtcaaaagggtgacccaggtccgcct
ggaccaccggggtatccaggacgtaatggtcctcctggctttgaatgtggcgttcgtgga
ccgccaggcattcctgggtctcccggtgagcctggcacaactgggcgacctggaccgaaa
ggaattgtgggatacccaggggaaaatggtgattcaggtgatcctggattgactggtgtg
gcaggaacccctggtttccctgggttagatggtcctaaaggtgacaaaggtgagtctgct
ggtgagccaggaccaacaggtgagagagggccctgtggagaaaaaggagtgtcagctccc
cccggagacataggagactctggtgaccctggatcacaagggccttatggaaactggggt
ccacttggaccacctgggaaccctggccattatggatctcctggtgtggttgggccccca
ggtcagtgtgggagacatggtccagagggtgtccgagggctttcaggtccaccaggccct
aaaggaaacataggacaccctggccttagaggatcttcagggctcccagggctccatggg
ctagatggcctgaagggtgtcaagggtgagattggatctcgagggctgggtataaaaggt
gatcgaggcaatcgaggactgactggagacaagggggatccaggagagccagggttgtat
gggacatcaaaaaatggcattcaaggtccaaaaggaccaccgggataccaaggtgatcct
ggtccagtgggtcctcctggatttcgtggtgaagaatgtaagattcttaaacctggattt
tgtggaggacagggtttccctgggctagatggacctccagggcccatgggagagatggga
cagccaggcaatgtcttcgcagtgagtggtgattgtggtggcccaggtgttcctggacca
ccaggatgtaaaggagaaaaaggatgccttgggcccaatggcctgcaagggtatcaaggc
ccagaagggccaaaaggtgaaagagggcagtgtgggcttatgggccttccgggacccggt
ggacccattggtgattgtggaccttcaggaccgtgtggtgcaaaaggagagaaaggggac
ccaggtccaaaaggagagcctggcgatgtcagacgccctaatccttgtcatcctcctcag
ggccttcctggtgctcgtggtttatctggcccatatggtgatgatggaaaaaacggtgat
aatggcagtgagggaccgaaaggtgcgaagggaccaaagggagctgatggcttccctgga
cctcctgggccagtaggatccgacggacctcctggaaaccctggaaataaaggcgtaaga
ggacccacaggctctcagggacccccgggaccagatggtgatcagggtcctcctggaaac
aacaagatgttttcctcaggtttccttttggtgatgcacagccagtctgagattgtgcca
acttgtcccctgggcctaaccgtgttatggaccggctacagcctgcaatatatgcaggat
cataagagaggacacacacaagacctgggccaggcaggttcatgtgtaccgatgttcagc
accatcccgttctcttcctgcgatatgcacttctgtaattactcaagccgcaacgaaaaa
tcctattggctgtctacaaccgcctcgatttctatggcgcctgtaagaggaatggaaatt
cggccacacatcagcaggtgtgtggtgtgtgatgcttcatcgccagccattgcaatacac
agtcaagacttgtctacaccactttgtccaccaaactggagaagcctctggactggatat
tcattccttatgtatgcaggatcagagaaaaaggcaggggaacagtctctggcgtcaaca
ggaagctgcttgcagaacttccacagtcagccgttcatggagtgccgaggtccggttggc
acatgccagtatttcacctccagcttcagtttctggctgacaaaagaaaacatgcagcac
tttaactccaatcctcaaagtcctggccaggagagtgtcagcaaatgcaacgtctgcatg
atgaatgatcccaacaattga
DBGET
integrated database retrieval system
