Pimephales promelas (fathead minnow): 120478794
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Entry
120478794 CDS
T08155
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120478794 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120478794 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120478794 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120478794 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120478794 (col4a4)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120478794 (col4a4)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120478794 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120478794
NCBI-ProteinID:
XP_039526859
LinkDB
All DBs
Position
Unknown
AA seq
1666 aa
AA seq
DB search
MTPPRRIASTSLLFCTRLLLALMTIHTALGGDKTEECGGRDCSVCQCFPPKGERGNPGIL
GRQGPIGPPGLPGTPGHPGEKGVRGIIGFPGESGSPGEQGVRGESGHAGSDGVPGHPGPG
GPPGLPGKDGCNGTRGEPGLGGEMGRPGLPGTMGLPGLKGIKGDTSYRITYIPGTPGVGG
LQGVRGPQGFRGDFGPQGPPGQVGPVGSMGIQGSPGPKGQPGDSGRSLPGPKGDEGDQGP
QGDPGPFEYVEPNLEDYVKGDKGEKGQKGICGSPGLDGPEGPPAEKGEKGIIGLPGPRGP
PGFPGRTGFQGPKGRLGENGLPGLFGNPGLKGFPGDPGPKGKPQYNYNYMKGPPGDPGLP
GAAGPPGDRGMIGIPGPLGDSGVSVTGAMGESGLQGLNGQEGEKGDPGRTYGSLLSYGEP
GKRGPPGRKGPQGNPGVPVCGYYCLPGGRGESGQVGERGPFGLPGVQGRKGPDGGCACDP
PGDLPGARGLQGPRGDPGDPGRKGSRGFTGDIGLIGEMGVGGVTGPRGYTGVRGIKGQKG
GVMVSCRKGEKGDSGSAGPCGKPGYNGMNGADGKIGDPGDPGSPGDNLVGLTGDRGCPGD
VGVKGFRGPTGPPGPCMMGSNGRRGQQGDPGPQGQTGPPGPKGIQGDTLPCGPGIIGVPG
YKGMPGFKGGKGTLGNPGFKGKNGPYGPKGENGDPGDFGCSGQKGPNGYLGDPGDTGPDG
NGISGFPGKTGFRGPQGLKGSLGDCVIGAPGPMGQFGVQGSAGPKGVPGPPGPIGLQGTS
GDPGYPGRKGEQGEDGRQGAPGFPGGRPEQCDKGRAGPPGKTGPPGASGQRGTPGEKGSL
GNQGPPGFGVKGDPGKPGFPGIQGYTGLQGPSGLKGDSGNPGFTGPKGLAGFPGLDGYAG
NRGQTGPLGAPGQKGLRGLNGYPGFPGVNGNKGQKGCIGPTGPPGDIISVPVKGRVGPPG
PHGVNGFCGERGQKGDPGPPGPPGYPGRNGPPGFECGVRGPPGIPGSPGEPGTTGRPGPK
GIVGYPGENGDSGDPGLTGVAGTPGFPGLDGPKGDKGESAGEPGPTGERGPCGEKGVSAP
PGDIGDSGDPGSQGPYGNWGPLGPPGNPGHYGSPGVVGPPGQCGRHGPEGVRGLSGPPGP
KGNIGHPGLRGSSGLPGLHGLDGLKGVKGEIGSRGLGIKGDRGNRGLTGDKGDPGEPGLY
GTSKNGIQGPKGPPGYQGDPGPVGPPGFRGEECKILKPGFCGGQGFPGLDGPPGPMGEMG
QPGNVFAVSGDCGGPGVPGPPGCKGEKGCLGPNGLQGYQGPEGPKGERGQCGLMGLPGPG
GPIGDCGPSGPCGAKGEKGDPGPKGEPGDVRRPNPCHPPQGLPGARGLSGPYGDDGKNGD
NGSEGPKGAKGPKGADGFPGPPGPVGSDGPPGNPGNKGVRGPTGSQGPPGPDGDQGPPGN
NKMFSSGFLLVMHSQSEIVPTCPLGLTVLWTGYSLQYMQDHKRGHTQDLGQAGSCVPMFS
TIPFSSCDMHFCNYSSRNEKSYWLSTTASISMAPVRGMEIRPHISRCVVCDASSPAIAIH
SQDLSTPLCPPNWRSLWTGYSFLMYAGSEKKAGEQSLASTGSCLQNFHSQPFMECRGPVG
TCQYFTSSFSFWLTKENMQHFNSNPQSPGQESVSKCNVCMMNDPNN
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgacacccccccgccggatcgcctcgaccagcctccttttctgcacaaggcttttattg
gcacttatgacgatacacactgctttggggggggacaagacagaagagtgcgggggtcga
gactgcagcgtctgccagtgtttccctccaaaaggagagaggggaaatcctggtatctta
ggtcggcagggccccattggccccccaggtttgcctggcaccccaggacatcccggtgag
aagggtgtacgtggtatcataggattccctggggagtctggctcaccaggagagcagggt
gttcgaggagagagcggtcatgctgggtcagatggagtgcctggtcatccggggcctggt
ggtcctcctgggcttccagggaaggatggatgtaatggaaccagaggggaacctgggctg
ggtggtgagatgggacgacccggcctgccaggaaccatgggactacctgggttaaaaggt
atcaaaggggacacctcttataggataacttacattcctggaacacctggtgttggtgga
ttacaaggagtacgtggaccacaaggatttagaggggattttggtcctcaaggtccacca
ggacaagtaggacctgtgggaagtatgggcatacagggttcaccaggtccgaaaggccaa
ccgggagactcgggaagatcactgcctggaccaaaaggagatgaaggggatcaaggtcct
cagggggatccaggtccatttgaatatgtggagcccaacctagaagactatgtgaaaggc
gataagggggaaaagggacaaaaaggaatttgtggaagtcctggccttgacggtccggaa
gggcctccagcagaaaaaggagagaaaggcataattgggttacctggacccagaggccct
cctggatttccaggccgaacaggttttcaaggacccaaggggagacttggggaaaacggt
ctccctggcctatttggcaatccaggactaaagggcttcccaggtgacccaggacctaaa
ggaaagccacagtacaattataactatatgaaaggaccacctggagatcctgggctccct
ggtgccgccgggccacctggtgatagagggatgataggtatacctggtccccttggtgat
tcgggagtctctgtaacaggtgcaatgggtgaatctggtctccagggtctcaatggacag
gaaggagaaaagggtgacccaggaagaacatatgggtcactcttaagctacggggaacct
ggaaaacgaggccctcctggacgtaaaggacctcaaggaaatcctggcgttcctgtttgc
ggttactactgccttcctggaggacgtggagaatctggacaggttggagagagagggcct
tttggattgccaggtgtccaggggagaaaaggtcctgatggaggatgtgcatgtgacccg
cctggtgatctacctggcgctcgtggtctccaaggcccccggggtgaccctggtgatccc
gggcgaaaagggtcccggggtttcactggtgatatcggactcatcggagagatgggtgtg
ggaggtgtgactggtcccagaggctacacgggtgtccgagggattaaaggacagaaagga
ggagttatggtgtcatgcagaaagggagagaaaggtgactcgggatctgctggaccatgt
ggaaagccagggtataatgggatgaacggggctgatgggaagattggcgatcctggagat
cctggatctccgggagataatcttgttggactgacaggcgacaggggatgtccaggagat
gttggtgtgaaaggcttcagaggtccaactggtcctcctggaccatgtatgatggggtca
aatgggcgacgagggcaacaaggggatcctggacctcaaggtcaaacagggccacctggt
cctaaaggaattcaaggtgatacactgccctgtgggcctggcattattggagtccctggt
tacaaaggaatgcctggatttaaaggtgggaaaggtacacttggaaatccaggattcaaa
ggaaagaatggaccatatggtcccaaaggagagaatggagaccctggcgattttgggtgt
agcggacagaaaggtccaaatggatatttaggagatccaggtgacactggccccgacggc
aacggtataagcggctttcctggcaaaactggatttcgtggaccccagggtctgaaaggg
tctttaggagactgtgttattggggctccaggaccgatgggccaatttggggttcaggga
agtgcgggccctaaaggtgtacctggacctcctggaccaattggattgcaaggtacatca
ggtgatcctggatatcctggaagaaaaggggaacaaggagaggatggtagacaaggggca
cctggtttcccaggtgggagaccagaacaatgtgacaaaggacgagctggtccacctggc
aagacaggaccaccaggcgctagtggacagagaggcacccctggagagaaaggatctctt
gggaatcagggacctccaggctttggagttaaaggagaccctggtaagcctggtttccca
ggcattcagggatacacaggccttcagggaccttcaggactcaaaggggacagtggaaat
cctggatttactggaccaaagggtttggctggatttcctggtctagatggctatgctggc
aacagagggcagacgggccctttaggggctcctggacaaaaaggccttaggggtctgaat
ggatatccaggtttcccaggggtaaatggaaacaagggccagaaaggatgcattgggcca
actggacctccaggagacataatttcagtgccagtcaaaggccgggtaggaccacctgga
cctcatggggtgaatggtttctgtggagagaggggtcaaaagggtgacccaggtccgcct
ggaccaccggggtatccaggacgtaatggtcctcctggctttgaatgtggcgttcgtgga
ccgccaggcattcctgggtctcccggtgagcctggcacaactgggcgacctggaccgaaa
ggaattgtgggatacccaggggaaaatggtgattcaggtgatcctggattgactggtgtg
gcaggaacccctggtttccctgggttagatggtcctaaaggtgacaaaggtgagtctgct
ggtgagccaggaccaacaggtgagagagggccctgtggagaaaaaggagtgtcagctccc
cccggagacataggagactctggtgaccctggatcacaagggccttatggaaactggggt
ccacttggaccacctgggaaccctggccattatggatctcctggtgtggttgggccccca
ggtcagtgtgggagacatggtccagagggtgtccgagggctttcaggtccaccaggccct
aaaggaaacataggacaccctggccttagaggatcttcagggctcccagggctccatggg
ctagatggcctgaagggtgtcaagggtgagattggatctcgagggctgggtataaaaggt
gatcgaggcaatcgaggactgactggagacaagggggatccaggagagccagggttgtat
gggacatcaaaaaatggcattcaaggtccaaaaggaccaccgggataccaaggtgatcct
ggtccagtgggtcctcctggatttcgtggtgaagaatgtaagattcttaaacctggattt
tgtggaggacagggtttccctgggctagatggacctccagggcccatgggagagatggga
cagccaggcaatgtcttcgcagtgagtggtgattgtggtggcccaggtgttcctggacca
ccaggatgtaaaggagaaaaaggatgccttgggcccaatggcctgcaagggtatcaaggc
ccagaagggccaaaaggtgaaagagggcagtgtgggcttatgggccttccgggacccggt
ggacccattggtgattgtggaccttcaggaccgtgtggtgcaaaaggagagaaaggggac
ccaggtccaaaaggagagcctggcgatgtcagacgccctaatccttgtcatcctcctcag
ggccttcctggtgctcgtggtttatctggcccatatggtgatgatggaaaaaacggtgat
aatggcagtgagggaccgaaaggtgcgaagggaccaaagggagctgatggcttccctgga
cctcctgggccagtaggatccgacggacctcctggaaaccctggaaataaaggcgtaaga
ggacccacaggctctcagggacccccgggaccagatggtgatcagggtcctcctggaaac
aacaagatgttttcctcaggtttccttttggtgatgcacagccagtctgagattgtgcca
acttgtcccctgggcctaaccgtgttatggaccggctacagcctgcaatatatgcaggat
cataagagaggacacacacaagacctgggccaggcaggttcatgtgtaccgatgttcagc
accatcccgttctcttcctgcgatatgcacttctgtaattactcaagccgcaacgaaaaa
tcctattggctgtctacaaccgcctcgatttctatggcgcctgtaagaggaatggaaatt
cggccacacatcagcaggtgtgtggtgtgtgatgcttcatcgccagccattgcaatacac
agtcaagacttgtctacaccactttgtccaccaaactggagaagcctctggactggatat
tcattccttatgtatgcaggatcagagaaaaaggcaggggaacagtctctggcgtcaaca
ggaagctgcttgcagaacttccacagtcagccgttcatggagtgccgaggtccggttggc
acatgccagtatttcacctccagcttcagtttctggctgacaaaagaaaacatgcagcac
tttaactccaatcctcaaagtcctggccaggagagtgtcagcaaatgcaacgtctgcatg
atgaatgatcccaacaattga
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integrated database retrieval system
