Pimephales promelas (fathead minnow): 120478796
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Entry
120478796 CDS
T08155
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04510
Focal adhesion
pprm04512
ECM-receptor interaction
pprm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120478796 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120478796 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120478796 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pprm04147
]
120478796 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120478796 (col4a3)
Exosome [BR:
pprm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120478796 (col4a3)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120478796 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120478796
NCBI-ProteinID:
XP_039526861
LinkDB
All DBs
Position
Unknown
AA seq
1680 aa
AA seq
DB search
MDSCLILRATLFGLMLLGLLSPARTKGGCVCSGKSECGCQGIKGQKGQMGFPGLDGVMGV
QGHRGKEGPPGLPGPIGYMGSTGMHGHKGSRGPSGTPGFFGPPGLPGFPGKEGPRGLPGL
PGCNGTKGEHGPPGFLGPMGLPGRQGRPGIQGPKGDCYVFPPSEQVKGMCGPRGRDGDKG
PLGLPGFPGPVGPEGPRGPPGIEGIPGLQGEKGREGRIMGIPGPIGQKGERGPPGVPGPR
GVKLFVSGQKEPKGDSGDFGDIGCPGSNGLRGRPGPKGKKGETGEPGALGKPGKEGLQGE
LGPKGVPGDAGYQGVTGIAGEMGLKGDPGAPGVPGEFVIIDTEIKGQKGFPGPPGPPGLQ
GSEGFNGFPGPPGPPGTAITGPNGKRGTPGFRGVKGEKGEPAPDIRGPKGRDGQPGERGP
PGEPGPPGTPQVKSRLGPKGLKGNKGLTGPEGLYGDPGKPGEQGELCRLCAASAAEPGPP
GPPGVSGEPGDPGLGGVQGNKGFRGIKGPEGPPGPLGFLGPPGFPGPPGPKGDLGIRSEI
GEKGQKGNCGGVGPLGIKGQDAMPGTPGFKGPSGAKGNPSPPGPKGNQGDPGISGDPGST
GPMGSQGSMGVGQPGTPGEKGSLGLVGRQGNPGEPGEKGSPGPVQTIPGDPGEPGLPGPP
GLPGPPGNDGYPGVQGFPGLCGLKGEKGLSIPGVSGLTGPKGDKGVKGKPGQPGYGSVGR
PGPPGPPGMPGTKGEITFGSPGPKGRKGLPGDEGFIGVPGVSGPPGLSGCRGQRGRDGPP
GDRGALGLDGLPGEAGVPGCCMPGAKGDEGPSGFRGLDGPTGLQGLKGPKGETGLPGMGL
PGMQGVFGIPGEIGQTGLVGIRGPKGFHGRDGSPGFPGTQGDQGSPGMFGLPGVDGNPGP
PGLPGPKGLIGRNGVPGDTGEPGEPGDTGTCGPKGLASNIMCPGDPGDPGLPGLLGLPGS
KGELGFPGNYGQCGKNGVPGLPGPPGHPGDPGHNGLPGNRGLDGNFGDPGVMGFPGVKGL
KGLPGVRGGTGTPGVRGSNGPKGVKGEPSPPGPGLPGLPGEKGEPGIPGARGEKGDKGIY
GKIGLPGFSGVPGERGETGLPGDPGPPGAPGDDGLDGLPGPPGCEGPCGPPGVPGSAGDP
GSSGYRGAQGRDGIPGSAGDKGDRGCTKQGDPGPPGIKGEKGIKGCSGPPGPCGPPGPCG
PAGVIGPPGKPGDMGQQGYPGPPGVCISGPKGERGPNGLPGPPGLRGPYGPPGDPGPGLK
GDKGSDGPRGLVGRPGCAGDRGVLGEPGRDGYPGFKGLKGNMGPLGCVGPVGQKGNCGPI
GLPGLKGCKGSPGIKGPKGYDAVAEVISSSGDPGLPGKVGEKGEPGENGPKGLRGLKGVQ
GQKGYTGADGGVGPKGSPGPKGDTGPPGEQGPCGLPGEVGAKGAQGPPGQKLGNGKRDGF
IFTKHSQTTDVPDCPCGSKRLYIGYSLLFINGNNFGHGQDLGTLGSCLPRFSTMPFLVCN
HNDTCRYASRNDYSYWLSTDTLKSANEELIFGDPLAQYISRCSVCEAPANVIAIHSQTID
IPKCPTGWLPLWQGFSFAMQTGAGPEGSGQPLVSPGSCLEEFRKIPFIECHGRGSCNLYP
DAYSYWLASLDPSRMFSVPVQQTAREREIISRCRVCRTQSGGYFLSLSVLNDRKLNWLNV
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atggattcttgcttaatattgagagcgacgcttttcgggctgatgttgctgggacttcta
tcaccggcacgaactaaaggggggtgtgtttgcagtgggaaatctgaatgtggttgtcaa
ggaattaaaggacaaaagggtcagatggggtttcctggtttggatggtgtaatgggagtt
caggggcatcgaggaaaggaaggccctcctggacttcctggtccaattggatacatggga
agcacaggcatgcacgggcataaaggttctaggggaccttcagggacgccaggattcttt
ggaccaccgggactaccagggttccctggaaaagaggggccgagggggcttcctggtctc
ccaggatgcaatggaacaaagggtgagcatggtcccccaggctttttaggcccgatggga
cttcctggacggcagggaagaccaggaatccaaggacctaagggagattgctatgtcttc
ccaccctccgaacaagtgaaaggaatgtgtggtcctcgaggcagagatggagataaaggt
ccactaggattgccaggatttcctggaccagtgggaccagaggggcctagaggtccacca
ggaatagaaggcattcctggattacaaggagagaagggtcgagagggtcgaatcatggga
atacctgggcccataggtcaaaagggggagagaggaccgcctggtgtaccaggaccaaga
ggtgtaaagttatttgtgtcaggacaaaaggaacctaagggtgacagtggggattttgga
gacattggatgccctgggtcaaatggtcttcgtggtcgtcctggtcctaaggggaagaaa
ggggaaaccggagagcctggggctctggggaaacctggaaaggaggggctgcaaggagag
ttaggccctaagggagtgcctggagatgcaggatatcaaggagttactgggatagcagga
gaaatgggtctgaagggtgaccccggtgcccctggtgtccctggagagttcgttataatt
gatacggagatcaaaggtcaaaaaggttttcctgggccaccaggacctcctggtctacaa
ggtagtgaaggtttcaatggttttcctggacctccaggtcctccagggactgccataaca
ggacctaatggaaaacgaggtaccccagggtttagaggtgtgaaaggggaaaaaggagaa
cctgcacctgacatcagaggacccaaaggacgtgacggccaaccaggggaacgaggaccc
cctggtgaacctggacctccaggaactccacaagtcaaaagtcgcttgggaccaaaaggg
ctcaagggtaacaaaggcctaacaggccctgagggtctatatggagatcctggaaaacca
ggagagcaaggagaactttgcagactttgtgctgcttctgctgctgaacctggacctcca
ggaccacctggagtttcaggcgaacctggagatccaggtcttggaggagttcaaggcaat
aaaggattccgaggcatcaaaggtccagagggtccaccgggtcctctgggtttcttaggt
cctccaggatttccagggcctccagggcccaaaggagatctagggattagatctgagatt
ggggagaaaggacagaaaggaaactgtggtggtgtaggaccattggggataaaggggcaa
gatgctatgccgggcaccccaggcttcaaaggaccatcaggagcaaaaggaaacccaagt
cctccagggcctaagggcaaccaaggtgatccagggatttctggagaccctggcagcaca
ggtccaatgggcagccaagggtcaatgggtgtcgggcaaccaggaacacctggagagaaa
ggaagtttgggattagtgggccggcaaggaaatcctggagaaccaggtgagaaaggatct
ccaggaccagtacaaacaatacctggagacccaggtgagcctggactacctggtccacct
ggtctaccaggacctccaggtaatgatggttatcctggggttcaaggttttccgggattg
tgcggtttaaaaggagagaaaggactgtcaataccaggagtttctggacttactggtccc
aaaggtgataagggtgtgaaaggcaagccaggtcaacctggttatggaagtgtaggccgt
cctggccctccaggaccaccaggaatgccaggcacgaagggtgaaataacattcggctcc
ccagggcccaagggtcggaaaggcctgccaggagatgaagggtttattggggtaccagga
gtctctggccctcctggattatcaggatgtcgaggtcaaagaggaagggatggaccacca
ggagaccgtggtgcactaggtctggatggtttgccaggagaagctggtgttccaggatgt
tgtatgccaggagctaagggtgacgaagggccgtcaggtttcagaggactagatggaccc
actgggctgcaagggctgaaggggccaaaaggtgaaactggattacctggaatgggttta
cctggtatgcaaggtgtgtttgggatacctggggaaattggacagactggtttggttggt
atccggggaccaaaaggtttccatggtcgggatggttctccaggctttccaggtacacag
ggagatcagggtagtcctggaatgtttggcctacctggagtagatggaaatcctggacca
ccagggctcccaggacctaaaggtttaattggtaggaatggagtgcctggtgacacagga
gaacccggagaaccaggagacacagggacctgtggtccaaagggactggcatcaaatatt
atgtgtccaggggatcctggtgaccctggcctaccaggtcttcttggtctacctggctct
aaaggggaattaggattcccaggcaactatggacaatgtgggaagaatggggttccagga
ttacctggtccaccaggtcatcctggtgaccctggccataatgggcttccaggaaatcgg
ggtcttgatggaaactttggggatccaggagttatggggtttccaggagtgaaaggatta
aaaggtttacctggtgttcgcggggggactggaactcctggtgtccgagggtcaaatgga
ccaaagggggtcaaaggtgaacccagcccccctgggccagggcttccaggactacctggt
gagaagggtgagccaggcattccaggggcaagaggggaaaagggtgacaagggtatatat
ggaaaaattggtctcccaggtttctcaggggttcctggggaaagaggcgaaactggatta
ccaggagatccaggacctccaggagctcctggtgatgatggtttagatgggcttccaggt
ccacctggatgtgaagggccctgtggtccaccaggtgttcctggttcagctggagaccct
gggtcttcaggatatcgaggagctcagggcagagatggcattccaggatctgctggagat
aaaggagatagagggtgcactaagcaaggggatcctggcccacctggcatcaagggtgag
aaaggtattaaaggctgttctggacccccagggccatgtgggccaccaggtccctgtggt
ccagctggagttattggtcctccaggcaaaccaggagatatggggcaacaagggtaccca
gggccacctggtgtctgtatcagtggtccaaaaggggagcgaggacctaatggattacct
ggccctccaggtctcagaggaccatatggtcctcctggtgaccccggtccaggcctaaag
ggtgataaaggcagcgacgggcccaggggacttgtggggcgacccggttgtgctggtgat
cgaggtgttcttggtgaaccagggagggatggatatcctggtttcaagggactgaaagga
aatatggggccattgggttgtgttggaccagttggccaaaaaggaaattgtggtccaatt
gggcttcctggattaaaaggttgtaaaggatctcctggaattaaaggaccaaaaggttat
gatgctgtggctgaggtcatctctagctctggtgaccctggtttgcctggaaaagttggg
gagaaaggagaaccaggagaaaatggacctaaaggattacgaggattaaaaggagtgcaa
ggtcagaagggatatacaggtgcagacggaggtgttggaccaaaggggagccctggtccg
aagggcgacactggcccaccaggagaacaaggtccttgtggtttgccaggcgaagtgggt
gccaagggcgcacagggtccacctgggcaaaaactaggaaatgggaaaagagacggattt
atttttaccaagcatagccagacaacagatgtaccagactgtccttgtgggtcaaaacgg
ctgtacattggatattcacttctcttcattaacggcaataacttcgggcacggacaagac
ttaggaactctgggaagctgtttgcccaggttttccaccatgcctttcctggtctgtaat
cataacgacacttgtcgctacgcctctcgaaatgattactcctattggctgtctacagac
acgctgaagtctgcaaacgaggagttgatttttggagatccattggcacagtatatcagc
aggtgttctgtgtgtgaggcaccagctaatgtaatagcaattcacagccagaccattgat
atcccaaaatgtccaacaggatggcttccactatggcaaggtttctcctttgcaatgcaa
acgggggcaggcccagaaggttccggacaacccctggtctcacctggatcctgcctggaa
gaattccggaagattccattcatagagtgtcatggtcgtggctcctgtaacctctatcca
gatgcctacagctactggcttgcatcacttgacccaagcagaatgttcagtgtgcctgtc
caacagacagcaagagagagagaaatcatcagccgatgtcgggtctgtcgcactcagtcg
ggtggatatttcttgtctctttctgtactgaatgataggaagctgaattggctgaacgtg
tga
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integrated database retrieval system
