Pimephales promelas (fathead minnow): 120478856
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Entry
120478856 CDS
T08155
Name
(RefSeq) LOW QUALITY PROTEIN: Down syndrome cell adhesion molecule-like protein 1 homolog
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120478856
Cell adhesion molecules [BR:
pprm04515
]
Immunoglobulin superfamily
DSCAM family
120478856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
C1-set
Ig_5
Pur_ac_phosph_N
V-set_CD47
Ig_6
Interfer-bind
fn3_2
Receptor_2B4
Sp38
ChitinaseA_N
DUF1461
Motif
Other DBs
NCBI-GeneID:
120478856
NCBI-ProteinID:
XP_039526958
LinkDB
All DBs
Position
Unknown
AA seq
1939 aa
AA seq
DB search
MRGNVAVFKCLXPSAVQEYVSVVSWEKDTVSIVPGNRFFLTSYGALYISDVQKEDALSTY
RCITKHKYSGETRQSNGARLSVLDPTESPPSLMDSFQSGEVQVGRSIELPCIASGYPNPT
IRWLKDGRPLPADSRWTRRLTGLTISDLRLEDSGNYICEVTNSFGSKEVTGHLNVIEPLR
VTLSPKNLKTGISSTVILSCAVQGSPHFTVSWFRNTEPIVPDQHFSIQGAHNETLFITAA
QKRHSGAYQCFATRKGQTAQDFSIILLEDGTPRIVSSFSERVVAPGEPFSLMCAAKGAPP
PTITWTLDDEPVARDSAHRASQYTLSDGSTVSHVNVTNPQIRDGGVYRCAARNSAGSAEY
QARINVRGPPSIRAMRNITAVAGRNTFINCRVIGYPYYSIKWYKDIVPLPDNHRQVVYEN
GTLKLSDVQKGMDEGAYLCSVLIQPQLSISQTVYVTVKVPPLIQPFDFPPTSIGKLMYIA
CVVSSGDMPIRITWRKDGQEIVSGTSGVTIETKEFMSSLQISKVSLEHNGNYTCIASNDA
ATVSSERQLIVTVPPGFLVQPNNQDGIYGKSEVLNCSVKGYPPPKVVWKHAKGIGNPQQY
HPVPLTGRIQILSNGSLLIRHVLEEDRGYYLCQASNGVGSDISKSMMLTVKIPAMITSHP
NTTMAIKGQNKELNCTARGENPIIIRWERGDTYIDSINPRYSITTSHNEKSDEVISTLKL
KPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVREVKDRSMNLRWTQRFDGN
SIITSYDIEYKNKSDPWELKHATRKISPTNNQANIVELHPASVYSIRMYSYNKIGRSQAS
KELTISTEEAPPDGPPMEVILQPMTSQSIRVTWKAPKKELQNGVIRGYQIGYRENGPGSN
GQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPP
QNVRAITVTSDEAVITWSEPPRMTLNGVLKGYRVVFWSLYPDGEWGEMQNITTTREQVEL
KGLEKFTNYSIQVLAYTQAGDGVRSNVLYIQTREDHPGPPAGIKAVPSSASSVVVSWLPP
IKPNGIIRKYTIYCSSPGSGQPAPSEYEANPELLIYRITHLTRGQQYLIWSAAVTTAGRG
NISEKVTVEPAGKAPAKILSFGGTVTTPWMKEVRLPCSSVGEPTPTIKWTKDSEDTAIPV
TQDGHRNILSNGTLVLRSVKAEDSGYYTCTATNTLGFDTIIVNLLVQVPPDQPRLTVSTT
STSSITLAWIPGDNGGSSIRGFVLQYSVDNTEEWKDVFISSSERSFKLDNLRCGTWYKVK
LAAKNSVGAGRISEIIEAKTHGREPQFNKDQPLFTHINSTHARLNLQGWTSGGCPITAVL
LEFRPKGTWAWQSVRTNASADIFLAELREATWYELKMKACNSAGCGNQSSQFATLDYDGS
TIPPIKSARGEGDDVKKLFSIGCPVILVTLGMALLFIIRKKRKEKRLKRLRDAKSLAEML
ISSKNNRSFDTPVKGPPQGPRLHIDIPRVQLLIEDKEGIKQIGEDKATIPVTDTEFSQSV
NPQSFCTGVSVHHPALIQNTGPLIDMSDIRPGTNPVSRKSVKSAHSTRNRYSSQWTLTKC
QASTPARTLTSDWRTVGSQHGITVTESDSYSASLSQDTDKGRNSMVSTESASSTYEELAR
AYEHAKLEEHLQHAKFEITECFISDSSSDQMTTGTNDNADSMTSMSTPSEPGICRFTASP
PKPQDYDRGKNVAVPIPHRANKSEYCNLPLYMKTDPFFRKQAELHDPCPVVPPREASIRS
LAARAYHTQGRHMTLDPSKQQALTLGHGGLSSLTSSGASGTSGPASSGAAGSSSISSGTA
TLPQRTLTMPSTSSTSSAPSGAVAAGAGASASSTGGSGLTPGSSKVGGSRDSLLESSSSG
LGRLQKQNAGAYSKSYTLV
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcaacgtggccgtcttcaagtgcctcnatccctctgctgtgcaggagtacgtc
agtgtggtgtcctgggagaaggacactgtctccatcgtcccaggtaacaggtttttcctg
acatcatatggggccctctacatatctgacgttcagaaagaggacgccctctctacatac
cgctgcattaccaagcacaaatacagcggagaaaccaggcagagcaatggggctcgtctc
tctgtgctggaccccactgaatccccgccttctctgatggacagtttccagtcaggagag
gtacaagtggggcgcagcatagagttgccctgcatcgcctccgggtaccccaaccctacc
atccgctggctgaaggatgggaggccgcttcctgctgactcccgctggacgcggcgactg
accggcctcacaatcagcgatctccgcctggaagactccggaaactacatctgtgaagtc
accaacagcttcggctccaaagaggtcacgggacacctaaatgtcatcgagcctctgaga
gtcactttatcccccaagaacctgaaaacaggcatcagcagcacagttattctttcatgt
gctgttcagggctcgccccacttcaccgtctcctggttccgcaacacagaacccatcgtg
cccgaccagcacttctccatccagggtgcccacaacgagacactcttcatcacggcagcc
cagaaaagacactcaggggcatatcagtgctttgccacccgcaagggtcagaccgcacag
gacttctccatcatactgcttgaggacggcaccccacggatcgtctcgtctttcagtgag
cgcgtggtagcccctggcgagcccttctccctcatgtgtgcggccaaaggcgcccctccc
cccaccatcacctggacgctggacgatgagccggtagcgcgggactcggcgcaccgggcc
agccagtacacgctctccgacggctccactgtctcgcacgtgaatgtcaccaacccccag
atccgcgatgggggcgtgtaccgctgcgccgcacgcaactcggccggtagcgccgagtac
caagcgcgcataaacgtaagaggtcctccaagtatccgggccatgcggaacatcacggcc
gtggcgggtcgcaacacttttattaactgtcgtgtgattggttatccctattactccatc
aagtggtataaagatatagtgccattgccagacaaccatcgtcaggtggtgtacgagaat
ggcactctgaagttgagcgatgtgcagaagggcatggatgagggggcgtatctgtgcagt
gtgctcatccaaccccagctctccatcagccagactgtctacgtcacagtcaaagttcct
cccctcatccagccctttgacttccctcccacctccattggtaagctgatgtacatagcg
tgcgtggtgtcctccggagacatgccaatccggatcacctggaggaaggatgggcaggag
attgtgtcgggaacatcaggagtcaccatcgaaaccaaggagttcatgagttcccttcaa
atctccaaagtttctctcgagcacaacggaaactacacctgtattgcgagcaacgacgca
gcaactgtcagttcagagagacagctcattgtaacagttccccctggttttctggttcag
cccaataaccaggatgggatctatggcaagtcagaggttctgaactgctctgtgaaaggg
taccctcctcccaaagttgtctggaagcatgccaaaggtatagggaacccccagcagtac
cacccagttccactgacgggtcgcatccagatcctgtccaatggttctctgctgatccgc
cacgttctagaggaagaccggggatactacctgtgtcaggccagcaacggagtggggtcc
gacatcagcaagagcatgatgctcaccgttaaaattccagctatgatcacatcccaccca
aacaccaccatggccataaaagggcagaacaaggagttaaactgcaccgcccggggtgag
aaccccatcatcatccgctgggagcgaggcgacacttatattgactcgattaaccctcga
tactccatcaccaccagccacaacgagaaaagcgatgaagttatctccacactgaagctg
aaaccagcggagcgcggggattccgtctttttctcctgtcacgccatcaactcatacggc
gagggcagagggctcatccagctgacggtgcaagaaccccctgaccccccagagctggag
gttcgagaggtcaaagatcggagtatgaacctaaggtggacgcagcggtttgacggcaat
agcatcatcaccagctacgacattgagtacaagaacaaatccgacccgtgggagctgaaa
catgccacccgtaagatctcgccaaccaacaaccaggccaacatagtggagctccacccg
gcgtccgtgtacagcattcgcatgtactcctacaacaagattggacgcagtcaagccagc
aaagagctgaccatcagcacagaggaagcacctcctgacgggccacccatggaggtgatt
ttacagccaatgacttctcagagtatccgtgtcacttggaaggcacctaaaaaagagctc
caaaatggagtgatccgtggctatcagatcggttatagggagaacggaccgggcagtaat
ggacaatacagtatagtggagatgaaagccacaggcgatagtgaggtgtacacactggat
aacttgaagaagtttgctcagtacggcgtggtcgtccaggcgttcaaccgagccggaacc
ggaccttccagttcggagatcaatgccacaacactcgaagatgttcccagccagccaccc
caaaatgtgcgggccatcacggtgacgtcggacgaggcggtgatcacgtggtccgagccc
ccgcggatgaccctgaatggggttctgaagggctaccgtgtggtgttctggtccctctac
cccgatggagaatggggagagatgcagaacatcactaccactcgtgagcaggtggagctg
aagggtttggagaagttcacaaactacagcattcaggtcctggcctacacacaggcagga
gatggcgtccgcagcaacgtactctacattcagacccgagaagaccaccccggccctcca
gcgggcatcaaagcagtgccatcctctgcctccagtgtggtggtatcctggcttcccccc
atcaagcccaatggtatcatccgaaaatatacaatttactgttccagccctggatcgggc
caaccggcacccagcgaatacgaagccaaccctgagctgctgatatacagaatcacccac
ctgacccggggtcagcagtatctgatctggtcagctgccgtcaccactgctggtcggggc
aacatcagcgagaaggtgactgtggagcctgctgggaaagctcctgctaaaatcctatct
tttggtggaacggtgaccactccatggatgaaggaagtccggctgccgtgcagctcggtg
ggagagccgacacctaccatcaaatggaccaaagacagtgaggacactgccattccggtt
actcaggatggtcacaggaacattctttcaaatggtaccctggtgctacgttctgtgaaa
gccgaggattctgggtactacacctgcaccgcgaccaacacgttggggtttgacacaatc
atcgtaaacctgctggtacaagtgcctccagatcaaccacgtttgacagtttccaccacg
tccacttcttctataactctggcttggatccctggagacaatggaggaagctccatcaga
ggattcgtgctgcagtattcagttgataacactgaggagtggaaggatgtcttcattagc
tcaagcgaacgctctttcaagttggacaacttgcgctgtggaacctggtacaaagtcaaa
ctggcagctaaaaacagtgtgggagccggtcgcatcagcgagatcattgaggccaagact
catggcagagagccgcagttcaataaggaccagcccctcttcactcacatcaactccacc
cacgcccggctcaacctccagggctggacgagcggcggctgccccatcaccgctgtcctt
ctggagttccgtcccaaaggcacctgggcctggcagagcgttcgcaccaacgcctctgct
gacatcttcctcgctgagctgcgtgaggccacctggtatgagctgaagatgaaggcgtgc
aacagcgccgggtgcgggaaccagagctcacagtttgccacgctggattatgatggcagc
actattccgccaattaagtcagcacgaggggaaggggacgatgttaaaaagcttttctca
atcggctgcccagtcatcctggtcacgttaggcatggcgctactctttattatccgcaag
aaacgcaaagaaaagagactcaagagactcagagatgctaaaagcttggctgagatgctt
atcagcagtaagaacaatcgaagttttgacactccagttaaaggcccacctcagggaccc
cgactgcacatagatatcccgcgcgtgcagctgctcatcgaggataaagagggaatcaaa
cagataggtgaagacaaggccactatccctgtgacggacactgagttcagccaatcagtg
aaccctcagagcttctgtacgggtgtgtctgtgcatcaccctgccctcatccagaacact
ggccctttgattgacatgtcagacatcaggcctggcaccaatccagtatcgaggaagagt
gtgaagtctgcgcacagcacaaggaaccgctattccagccagtggactctgacgaaatgc
caggcctccacacctgctcgcactctcacctcagactggcggacagtgggctcccagcac
ggcatcacggtcacagagagtgacagctacagcgccagcctgtcccaggacacagataag
ggacgtaacagtatggtgtccacagagagtgcatcttccacgtacgaggagctggcccgg
gcgtacgaacacgctaagctggaagaacacctgcagcacgccaagttcgagatcacagag
tgcttcatctcagacagctcctctgatcagatgaccacaggaaccaatgataacgcagac
agcatgacctctatgagcacaccatccgaaccgggcatctgtcgcttcactgcctcccca
cccaaaccacaggactacgaccgcggcaaaaatgtggcagtgcccattccccaccgcgcc
aacaagagtgagtactgtaacctccccctatacatgaagacggaccctttcttccggaaa
caagcagagctacacgacccttgccctgtggtcccaccccgcgaggcctccatccggagc
ctcgccgcccgggcctaccacacacagggccgccacatgacattagacccctccaagcag
caggccctgacgctgggccacggtggcctgagcagcctgaccagctcgggggcctctggt
acgtcgggcccagcctcaagcggggccgctgggagctccagcatcagctcaggcacggcc
accctgccccagaggactctcaccatgcccagcacctcctccacctcctcggcccccagc
ggggcggtcgccgctggagcgggagccagtgcaagctccacgggaggcagcggcctaaca
cccggcagctccaaggtcgggggatccagagactctctgctagagagcagctcgtccggc
ttgggaagactgcaaaagcagaatgctggggcgtactccaaatcctacactctggtgtag
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integrated database retrieval system
