Pimephales promelas (fathead minnow): 120478924
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Entry
120478924 CDS
T08155
Symbol
dchs1a
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-16
KO
K16507
protocadherin-16/23
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
120478924 (dchs1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120478924 (dchs1a)
Cell adhesion molecules [BR:
pprm04515
]
Cadherins
Cadherin related
120478924 (dchs1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Cadherin_CELSR2_9th
Cadherin_pro
Fibulin_C
RIFIN
CADH_Y-type_LIR
FeoB_associated
TMEM154
DUF7190
Motif
Other DBs
NCBI-GeneID:
120478924
NCBI-ProteinID:
XP_039527055
LinkDB
All DBs
Position
Unknown
AA seq
3277 aa
AA seq
DB search
MKREGRTIMDPLHQNRTLKWWILVILYVAQHLMTIQSSMAPGTLQLQLDEEQPAGTVVGD
ISAGLPPDMIATHYFISDHQGTGVGTDLDIDESTGIIKTAKVLDREVRDRYSFIAVTMTG
ITVEVTILVNDINDHAPVFPRKRATFKIPEQTTIGTKFPLDPAVDADEDQLTTQGYIITD
GNVGQAFLLETKRGSNKVLYLDLVVNAVLDRETRSSYTLLLEAFDGGSPKRTGQMILDVT
VQDINDNAPVFNQSRYHAMISENLQPGNNVLQVFASDADEGDNGLVLYDINRRQSDPDRY
FVIDSRTGVITVNKPLDFEMRRVHELVIQARDNASQPEITNAFVTIQVRDYNDNQPTMTI
IFLSEDGXPHISEGAQPGQYVARISVTDPDYGEYANVNVSLEGGDGKFALTTKDSIIYLI
CVDKILDREEQDHYELRVMATDSGTPPLRAESSFTIQVLDVNDNPPLFDQQEYTQVIPEV
AFPGSFVVQVTARDKDQGPNGDVQYRILQTEGTHSDWFSVDTITGIVTTLTQLDYETDPI
PSVTVVATDRGRPPLSSTAVVKVILQDINDNEPVFGSKFYNASIKENAAAGTCFMEVTAT
DADGGSFGSISYSLGSGPGSVTPSQFTVGKHNGQICTTTSLDRDQGPANYDFTVTAVDGG
GLNSVAYVRVDLIDINDNRPAFYPLSYAVSLSTQSTPGTSVLKVTAHDPDAEENGRVTYR
TVPGGSSPFFTLNKDTGVISLSRALHGKANSVITMVVSAQDGGGLTAPINARVNISIVAG
LVAPPVFEQAQYFFLVSEDALRGTQVGVVRASTKNGVSKEISYTISSGDPMGYFTVDSET
GALRTSLPLDHESQPSLNLEVQAHCGNPPAFGQTRVRITVSDVNDNLPVFLPSSSESLIL
PEDTRMGTVVYKVQAEDRDSGPNGLLSFDIFSGGAQRTFSIDRNNGHIRLIGGLSYETTP
RYDLQVIAKDSGAPQLSSTFTLVIHVQAENGQGPMFDSLTYRVELKENTPLNTRFLQVRA
VNRDGPFSTSSTPLAYHLHPDGDAAGFGIVSESGWLFVKSALDREAKEMYLLTVLATSGN
GQLKKTGSATVRVSVMDENDNTPRFTQERAFLALRENLPVGTGFGRVSASDRDAGLNGRL
SYRLLHLDRHFQINSHTGEISTKLSMDRELQSSYQLIVVAQDGGTPARSATGTAFITVLD
ENDNAPSFSHAQTGRELLLQALEGQPSGFLLGTIHAKDPDEGENGTIFYSMSGPRAERFT
LNPNTGELRSSSPLSHSERPEYSFIVLASDRGSPPQSSTITLKIQVLSSSKGSATANSQL
LTLNSVEGAKPGSIVGSVRSPDSQTLPEAGQVTYTVVGGTDFDGTFVVERQTGDVYLARE
LDFEKAPRYTLQVEVDDFSMPLPKSHIVTVVIDVQDSNDHAPEFPEDPVVIVVPESADPG
STIYTFQAIDKDGSGPNSEVRYFILQQWPNIPDLLFLDPTTGVLSLGMMLDHERTSSLLL
VVQATDSPPDVSQQRRGTVTARIFVTDVNDNGPVFISPSVVSVMEDQPVGFVVVYVMAVD
PDQGENGRVTYRIQSGNTGAKFSLNPDTGSLSILRPIDREEQDLYNLTIVAEDHGLQQHS
SSQLLSIQVIDVNDEAPYFEESEYEAFIAENQPAGTTVLLVSASDMDQGTNGIVMYGSIA
GDDFSIHPVTGVITTSKPLDREAQGVYAVTVYARDGGSPPNFAKTTVHVTVLDENDNRPA
FGRVYYSLEVPENQEPVTLFTIRATDQDSGDSGVLHYKITEGDHFGDFHLDRKSGVLSTS
RPLDRESNAKYTLTVEAQDQGMPPLTSTVTLDINVLDLNDNSPVFPSSSYSVEVSEDASE
GSLVLEVSASDKDEGSNSEVVYFLSPESRGMFIVDQHTGRIITAAALDREKVASYSFQIY
AMDSSAANPRNTSAEVTVQVLDVNDNAPFFITDPLIINVSSSSLSNRKVLATMRAEDKDF
GANGSVFYRFANPVKGFTINSLTGDIQATEKLHALTQSQRTLFVEAMDQGNPSQSSLGVV
VVYIREQSYQGIRFVRNTRDVSLQENAAKGTAVVQIQAHYPDGSNSGINYSIFSGNKLQS
FSISPHTGEIWVESSMGLDFEETPRLRLVVKAETASSSSFMAVNLLLQDVNDNLPRFQLH
NYVAYVREAQGYDHPIIQVLANDLDQGQNGQVTYSIRSSSMSGLFKIDPVTGSISTAAIM
DREIWTQTNLVIMATDRGSPRLAGSATLTVIIVDLNDNSPTIPVPHEVRIPENTLIGTLI
TQVTGNDVDSGPSLSYSLLLDSDTQGKFGIHRFGGDVSLTASLDFEERTWYMLTVSSSDT
KQQSYANLTVLVEDVNDNAPVFSQDLYEVTLAEHSPAGSSVITVTATDKDSGENGRITYR
VVSTKDMFYIDPSNGTLFIKQKVEFDSQRPSILVVIEASDSGTPLLSTLSTVQVHVSDVN
DNAPVFHQTEYRASVSEDEVPGSTILTLEAVDGDLSRDNCGFDFAIASGNIGNAFQIESS
VRFLEGHGFQTVGTLILVDKLDFEIVSGYNLTIVVSDRGIPQQSSNVPVLITVVDTNDNP
PSFSRAEYKVVVNEKAETGTEILQLFAVDPDSTPNGEVQYSISSGDESELFSVDRWTGSL
RLRRSLDSEEQSSYMFIIQASDGQGHFALAPVTVEVKDINNNRPYFPLELLTASIRENQP
QNALVTILHAIDHDKGAFGELRYFLMYNSGNGKDSFLVNQTSGEVRTRFTFDFEKINTFN
FIAIAMDAGNYSSTVTVQVFVTGEDEYDPIFTNSDFTFRIPEGAKKGQSIGQVNANDEDG
GVDGIVLYSLTNSSPYFEVNTSTGVISLKMDAYHRHISRSKRETRQMTLDVIAHSPLENS
RKASAQITIDVTHTSFGLNTDMNVVLASAITASLAAIVFLIIVVVVIFLLRSQRYKKQET
CTRIVHNGTVLESLEESKVQEDDKLYHQTLPGYATDQTGNVGGTYTRGGSLDPSHSSGRG
SAEAEAAEDDEIRMINEYPRVSSISASMQEHIAARGPDSGIQQDADQLSDISCEPGMDAN
QWFKGKKLGSLSGTMLSSQLPTYRDEGGGYLGVGRGLNISHPKDYAFPEDGKPAVDGSLT
AIVASDEELRGSYNWDYLLDWCPQFQPLANVFTEIARLKDENAPPNPRRPFHPKAKTDPK
PRIDPPPLITSVAHPGAKTVLPKPAVGRTFPHLSSLRRSPIDHDGSVSSIAMSPSFSPSL
SPLSAHSPAIAPFGGHSSSIINTTDHSFEHEETELRI
NT seq
9834 nt
NT seq
+upstream
nt +downstream
nt
atgaagagagaaggaaggacaattatggatccattgcatcaaaacaggactttgaagtgg
tggatattggtgattctctatgtggcacaacacctcatgaccatccagtcatctatggca
ccaggaacattgcagctccaactagatgaggaacagcctgcaggaactgtagtaggtgac
atcagtgctggcctcccacctgacatgattgcaacccactatttcatctcagatcatcag
ggtacaggtgtcggcaccgatctggatatcgacgagagtacagggatcataaaaacagca
aaggtcttggaccgagaagtacgggaccgttacagcttcatagcagtcaccatgactggt
ataacagtagaagtaaccatcttagtcaatgacatcaatgatcacgcaccagtgttcccc
agaaaaagagccacgtttaaaatcccagagcagacaaccataggcaccaagtttcctctt
gatccggctgtggatgcagatgaggaccagctcactacgcaaggttacatcataacggat
ggaaatgtaggacaagcttttcttcttgaaaccaaacgaggatcaaacaaagtcctttac
ttggatttggtggtcaatgcggttttggacagagagacaagatcttcgtatactctactc
ttggaagcatttgatggtggttcacccaagaggacaggacagatgatcctggacgtgact
gtgcaggacatcaacgacaacgccccagtcttcaaccagagtcgttaccatgcaatgatc
tccgagaaccttcaacctgggaacaatgtactgcaggtgtttgcttcagatgctgatgaa
ggtgacaatggtttggttctctatgacatcaacagaagacagagtgatcctgatcgctac
tttgtcattgactcgcgaactggagttatcactgtaaacaagcctttggattttgagatg
agaagagttcatgagctcgtgatacaggctcgggacaatgccagtcaaccggagatcacc
aacgcctttgtgaccatccaggtgcgagactacaacgacaaccagcccaccatgaccatc
atcttcctcagtgaggatggtntcccacacatctctgaaggagcacagccgggccagtat
gtggctaggatttcagtcacggaccctgattatggagaatatgccaatgtgaatgtatct
ttggaggggggtgatggaaagtttgctttgaccaccaaggacagcataatttatctcatc
tgcgtggataagatacttgatcgcgaggagcaagaccactatgaactccgagtcatggcc
acagattctggcacccctccgttacgggcagagtcttcatttaccattcaggtcttggat
gttaatgacaacccacccttgtttgaccagcaggaatacacccaggttattccagaggtg
gcctttccgggaagttttgttgtacaggttacagcacgggacaaagaccagggacccaac
ggggatgttcagtaccgcatcctacagactgaaggaactcattcagattggttcagtgtt
gacacaattactggtattgtcaccaccctgacccagctagattatgaaactgaccctata
ccgagtgtaactgttgttgccactgacaggggtcgaccgccactgtcttctacagctgtg
gtcaaagtgatcctacaggatattaatgataacgaacctgtgtttggcagcaagttctac
aatgcatccatcaaggagaatgccgctgcagggacctgtttcatggaggttaccgctact
gatgctgatggtgggtcttttggctccatctcctactctctgggatctggtccaggctca
gtcaccccgtctcagttcaccgttggcaagcacaatggacagatctgtactaccaccagc
ctggatcgtgaccagggtccagccaactacgacttcaccgttactgctgttgatgggggt
ggactaaattcagtggcatatgtgcgggtggacctgatagacataaatgacaatcgacca
gcgttctaccctttgagctatgcagtgagcctgagtacgcagagcaccccagggacctcc
gtcctgaaggtgactgctcatgacccagatgctgaggagaacggcagagtgacgtaccgt
actgtacctggagggagctcacctttcttcactcttaataaagatactggagtgatttca
ctgtcacgtgctctacatggaaaggcaaactcagtcattaccatggtggtctcagcccaa
gatggtgggggccttaccgctccaatcaatgccagggtcaacatcagcatagtggcagga
ctggttgcaccccctgtgtttgaacaagctcaatactttttcttggtctctgaggatgcc
ctgcgtggaacacaagttggagttgtgcgggccagcactaagaatggcgtctcgaaggaa
atctcctacactattagctccggtgacccaatgggatacttcactgtggattcagagact
ggagccttgagaacaagcttgcctctggatcatgaatcccaacccagcttgaatctggaa
gtccaggcgcactgcggtaaccccccggcctttggccagactagggttcgaattacagtg
tccgacgtcaatgacaatttgcccgtcttcttgccctcgtcctccgagtcattgatttta
cctgaagacacacggatgggtacggtggtgtacaaggtccaagcagaagaccgcgattct
ggacccaatggtcttctgagttttgacatttttagcggcggtgcccagagaaccttcagc
attgatcgcaacaacgggcacatccgccttattggcggtttgtcgtacgagaccacaccc
cgctatgacctgcaggtgattgccaaagatagcggcgcacctcagctaagttctaccttc
accctggtcatccacgtacaagccgagaacggccaaggtcccatgttcgatagcctcaca
taccgagtagagctgaaggaaaacacacctctcaacacacgcttcctgcaggttcgtgca
gtaaaccgcgatggaccattttctacgtcttccaccccattagcctaccacctgcaccca
gatggtgatgctgcagggtttggcattgtgtccgaaagcggctggctgtttgtgaaaagt
gctttggatagagaagccaaagagatgtacctgctcactgtactggccacgtcaggcaac
ggacaactgaagaagacgggaagtgccacagtgcgtgtgtcagtgatggatgaaaacgat
aacaccccacgatttacccaagagagagcattcttggccttgcgcgagaacctgccggta
ggaactggtttcggccgtgtgtctgccagcgatcgagatgctggtctcaacggtcggttg
agctaccgcctgctccatctggatcgccacttccaaatcaactcccacacaggtgagata
agcacaaagctttccatggaccgtgaacttcagtccagctaccagctcattgtggtggct
caggatggtgggacccctgcacgcagcgctacaggcactgctttcatcacggttctggat
gagaatgataatgcgccctccttcagccatgctcagactggaagagagctcttgctgcag
gcgctagaaggtcaaccatctggatttctactgggaaccattcatgcaaaagaccctgat
gaaggagaaaatggaactattttctactctatgtctggtcctagagctgaacgtttcact
ctgaacccaaacaccggagagctgcggtcctcttcccctttgagtcattctgagcggcct
gagtacagtttcatcgttctggcctcggaccgaggttcacccccccagagctccaccata
acattgaaaatacaggttctgagctcaagtaaaggatcggccactgctaactcccaatta
ttaacactgaattctgtggagggagctaaacctggctctatcgtggggtctgtacgttca
cctgattctcagacccttcctgaagcaggccaggtcacgtacaccgtggtgggaggaaca
gacttcgacggcacctttgtggtagagcgtcagacaggtgacgtttacctggcccgtgag
cttgactttgaaaaagctcctcgatacactctccaggttgaggtggatgacttctccatg
cccctccctaaaagtcacattgtaacagtggtaattgatgtccaggacagcaacgatcat
gctcccgagtttcccgaagaccccgttgtcatcgtggtccctgagagcgcagatcctggg
tcgactatctacaccttccaggccattgataaagacggaagtggacccaacagtgaagta
cgctatttcatccttcaacagtggccaaacatcccagatctgctgttcctggatccaact
acaggagttctctctctgggaatgatgctggatcacgagaggacctcttcactcctcttg
gtggtccaggcgactgattcgccccccgatgtcagtcagcagcgccgtggtacagtcacg
gcccgtatatttgtcactgacgtgaatgataacggccctgtgttcatctcaccgtctgtg
gtgagtgtgatggaggaccagccggtgggctttgtcgtggtctatgtcatggctgttgat
ccagaccagggagagaacggacgagtgacataccgtatccagagcggcaacaccggagca
aagttcagccttaacccagatacaggctctttgtctattcttagaccaattgaccgtgaa
gagcaagacctctacaacttgaccatagtggcagaagaccacggtttacaacagcacagc
agctcccagttactgtcaatccaggtgattgacgtaaacgacgaggcgccgtactttgag
gaaagtgaatatgaagcttttattgcagagaatcagcctgcaggaaccactgtgctgctc
gtttcagcttctgatatggatcaagggactaatggaatcgtgatgtacggaagcattgca
ggagatgatttcagtattcatccggtgacaggagtcataaccacctccaaacctttagac
agggaggctcaaggggtctatgctgtgacagtttatgccagagatggtggttctcccccc
aatttcgccaagaccacagtgcacgtcacagtgctggatgagaatgacaacaggccggct
tttgggagagtgtactacagtctggaggtgcctgagaaccaggagcctgtgacactcttc
acaattagagccacagatcaagactctggggacagtggggtgctacactacaaaatcact
gagggagaccattttggtgatttccacctggacaggaaatcaggtgtgctgtccacctct
aggcctttggatcgagagtccaatgcaaagtacaccctcaccgtggaagcacaagatcag
ggcatgccgcccctcaccagcactgtcactttggacatcaatgtgctggacctgaatgac
aacagcccagtgtttcccagcagcagctactctgtggaagtatcagaagatgcttcagaa
gggtctcttgttctggaggtttcagcctcagacaaagacgaaggctccaacagcgaggta
gtctacttcttgagccctgaatccagaggaatgttcattgtggaccaacacacaggtcgc
attattacagcggcagctctcgaccgagaaaaagtggcctcctacagcttccaaatctac
gccatggactcctcagctgccaatccccgtaacacttccgctgaagtgaccgtccaggtc
ttagatgtaaacgacaatgcccccttcttcatcacagacccgctcatcatcaatgtctcc
agcagtagtctctccaaccgtaaagttcttgccaccatgagagctgaagataaggacttt
ggtgcaaatggatctgtattttatcggtttgcgaatcctgtcaaaggcttcaccataaac
tccttgacaggggatatccaggcaactgagaagctccatgccctgacccagagccagcgg
accctctttgtggaggccatggatcagggtaacccatcacagtcctctctgggagtggtg
gtcgtgtacatccgagagcagagttaccagggcatccgctttgtgcgcaacactagggat
gtgagcctgcaggaaaatgctgctaaaggtacagcagttgttcagatacaggcacactat
cctgatggatctaacagtggcatcaactacagcattttcagtggcaacaagctgcagtcc
tttagcatcagcccccacacaggtgagatttgggtagaaagttccatgggtctggacttt
gaggagaccccacgactccgcctggtggtcaaggctgaaaccgcgtcctccagctccttc
atggcagtcaaccttctcctacaggatgtcaatgacaacttaccacgctttcaacttcac
aattacgttgcttatgttcgtgaggcccagggttatgatcatcctatcattcaggtgttg
gcaaatgacctggaccagggtcagaatgggcaggtgacctactccataaggtcatcatcc
atgagtggcctcttcaagatcgacccggtcacaggcagtatatcgaccgctgccatcatg
gacagagaaatctggacacagactaacctggttattatggcaacggacagaggcagccct
cggttagcaggttctgccactctcacggtgatcattgtagacctgaatgacaacagtccc
accatcccagttccacatgaagtccggatccctgagaatactttgattgggaccctgatc
actcaggtcacagggaatgatgtggactctgggccttctctctcctattcccttcttctg
gactcagacactcaagggaagtttggaatacaccgctttggaggagacgtgtccttgacc
gcctctctggactttgaagagaggacatggtacatgctgaccgtcagctcctcagacacc
aagcaacagagttatgcaaatctgaccgtgcttgtggaggatgtgaatgataatgcacca
gtcttctcccaggacctttacgaggtgactctagcagaacactcgccagcaggaagctca
gttatcacagtaactgctacagataaggactctggagagaacggaaggataacatacagg
gtcgtgtcaacaaaggacatgttctacattgacccaagcaatggtactctgttcatcaag
cagaaggttgagtttgactcgcagcgcccttccattttggtggtgattgaagccagtgat
agtggaacaccattgttgagcacccttagcacagttcaggtgcatgtgtctgatgtcaat
gacaatgcccctgtattccaccagactgagtacagagcatctgtatccgaagacgaagtt
cctggttcgaccattctaaccctggaagcagtggatggggacttatctagggacaactgt
ggctttgattttgccatcgccagtgggaacattggtaatgccttccaaattgagagcagt
gttcgcttccttgagggccatggatttcagacagttggaacgctgatattagttgataag
cttgactttgagattgtgagtggctacaatcttactattgtggtctcagatcgtggcata
ccacaacaaagttcaaatgttccagttttaatcactgtagtggacaccaacgataaccca
ccgtccttcagtagggcggaatacaaagttgttgtcaatgaaaaggcagaaacaggaaca
gaaatacttcaactttttgctgtggaccctgactcgacacctaacggagaggttcagtat
tcaatcagttctggagatgaatctgagctcttttctgtagatcggtggactgggtccctt
cgtctgcggaggtctcttgatagtgaggaacagtcttcttacatgttcattattcaggcc
tcggatggtcagggccactttgctcttgctcctgtaactgtcgaggtcaaggacatcaat
aataaccggccttactttcctcttgaattacttacagcaagcattcgtgaaaaccagccc
cagaatgctctagtaaccatattacatgccattgatcatgacaaaggagcatttggagaa
ctgagatatttcctgatgtataattccggcaatggtaaagattcctttctagtgaaccaa
acctctggtgaggtgcgaacccgctttacattcgactttgagaagataaacactttcaat
tttattgccattgcaatggatgcaggcaactactcttctacagtcacagtgcaagttttt
gtgactggtgaagatgagtacgaccccatattcactaactcagattttaccttccggata
cctgagggtgccaagaaagggcaaagcatcggccaagtaaatgcgaatgatgaggatgga
ggcgtggacggcatcgttctctattcactcacaaacagttcaccttactttgaggtcaac
acatctactggagtgatatccctcaagatggatgcctatcatcgtcatataagccggtcc
aaaagagagacacgtcagatgacgttggacgttattgcccacagtcctttggagaattcc
cgaaaagcttctgcccagatcacaattgatgtcactcatacatcctttggcttgaacacc
gatatgaatgtggtacttgccagtgctataacagcttccttggcagccatcgtgttcctg
atcatagttgttgtggtgatattcctcttgagatcccaaaggtacaaaaaacaagagact
tgcaccagaatagtccacaacggtactgttctggagagtcttgaagaatcgaaagttcaa
gaggatgacaagctatatcatcagacccttcctgggtatgcaacagaccagactgggaac
gtcggaggtacctacacacgaggtggctctcttgacccatctcactctagtggacgtggt
tccgccgaagctgaagcagcagaagatgatgagattcggatgattaatgaatatccacga
gtttctagcatctccgcctctatgcaggagcacatagctgctcgcgggcctgactccggc
atccagcaagatgcagatcagctgtctgacatatcctgtgagccggggatggatgcaaac
caatggtttaaagggaagaagctgggaagtttaagtgggacaatgttgtcaagccagttg
ccaacttatcgggatgaaggaggtggctatcttggggttggaagggggcttaacatctca
catccaaaagattatgctttcccggaggatggtaagcctgctgtcgatggttctctaaca
gcaatcgtggctagcgacgaggaactgaggggcagctacaactgggactacctcctcgac
tggtgccctcagtttcagcctctggctaatgtcttcacagaaattgcacgattaaaagat
gagaatgctccacctaaccctcggcggccgtttcatcccaaagcaaagactgatcccaag
cccagaattgaccctcctcccctaattacctctgtagctcatccaggggcaaaaactgtt
ttgccaaaacctgctgtaggccgaacatttccccacctttcctcattgcgacgatcccct
attgaccacgatggctctgtttcctcaattgccatgtctccaagtttttctccatcgctt
tcaccgctttcagcacattcccctgccatcgctccttttggtggtcactcgtcctccatt
atcaatacaaccgaccactcctttgaacatgaggagacagaactgaggatttaa
DBGET
integrated database retrieval system
