Pimephales promelas (fathead minnow): 120479316
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Entry
120479316 CDS
T08155
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120479316 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprm04131
]
120479316 (si:ch211-266g18.9)
Membrane trafficking [BR:
pprm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120479316 (si:ch211-266g18.9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
BsuBI_PstI_RE_N
DUF4656
Motif
Other DBs
NCBI-GeneID:
120479316
NCBI-ProteinID:
XP_039527560
LinkDB
All DBs
Position
Unknown
AA seq
836 aa
AA seq
DB search
MKVFTSVLVFQKIPSGRGRDKSSIQCLECFGKNLYIGTKEGLIEYITVNSVSGEESLSVQ
EVGRRQMGRSGAIGQLTAVPFLNHLLVLWDGSVTALNMFSLEPIPALKKIQNVSLFYVSE
SVVQTDSVELIAASAKRKIVSIYKVCVDRWECVRQVALPQEPVVLAAHGTCLCVATCDRY
LLHDYQSQTTLDLFQHNLGKQNIIANKCGKGEFILNGPGNLGIFVMKNGTSQHPPVQWPD
GVVDAAVHFPYVLALQNQTVHIYSILDQQLKQTVLLQSAKSLVSTEESVFVVADKEIHRL
SPIPLEDQIQELVKRQRVDEALTLLDRVQDLLPKDSYKDLHKNVICTSGMIQFYREAFVE
AKELFIKGELDPREIISLYPAMPVSEDFTPQTTSVSNAKDLWTLSRDDKTRFQQYLSFLD
DFLIEVRPTGQGQICSRDIDSALFKLYLEQAEYEKLDQLVSSQNDCNLQMCVPDLEQHKR
FFTLGLLYQSQGQHFNAIQTWVKIVEDQSEDPLHISVFQHIVNTLSNLKHKPIIWKFVDW
VLQRDQEAGILIFTKMHASNHIMFAPEEVLTIITNYAVAMMLYLEFLVNELHSKEEKHHT
MLISSYVKWILQSIEADYSNETSREEMRHKLQMFLWQSSLYNADTIYEQISSSSLHVEKA
ILLGKSGKHKKALQVLVHEEKDQQAAVSYCWRTSAGRDRKFTQGMFLTLLQIYLESTHHV
IAAVDLLNQNAASFDLVSVLRVLPGSWSLKLVLRFLCESMRGTVHEKRMRGLEMSLAKVE
TLRYKHVWMEAKHEKIRVDRGCVCHSCQKRLTGPEFLRRPTGELTHVSCHGGESGH
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtctttacttctgtgctagtctttcaaaaaattccctcagggagaggcagagac
aaatccagtattcaatgtttggagtgttttggcaaaaacctctatattgggaccaaagag
ggactcatcgagtacatcactgtaaatagcgtgagtggtgaagaaagcctttcagtgcag
gaggtggggaggagacagatgggccggagcggagcaatcggccagctgacggcggtccct
tttctgaaccatctcttagttctctgggatggttcagtcacggcgcttaacatgttctcc
ctggaacccattcctgccctgaagaaaatccagaacgtgtcactcttctatgtcagtgag
tcagtggttcagactgattcagtggagctcattgcagcctcagccaagaggaaaatagtg
agcatttataaggtgtgtgtggacagatgggagtgtgtgagacaggtggctctgccgcag
gagcctgtggttctggctgcgcatgggacatgtctgtgtgtggccacttgtgacagatat
ttgctccatgattatcagagccaaaccaccttagatctttttcaacataacctgggaaaa
caaaatatcattgccaacaaatgtggaaaaggagaattcattttaaatgggcctggaaat
ttggggatatttgtgatgaagaatggtacttcccagcatcctcctgtacagtggcctgat
ggagtggtggacgctgcagtgcatttcccatatgtgctggctctacaaaatcagactgtt
catatctacagcattctggaccaacagctgaagcaaactgtccttttacaaagtgccaaa
tctctcgtatcaacagaagaaagtgtttttgttgttgctgacaaagagattcaccggctg
tcaccaattccgctggaggatcaaattcaagagctggttaagagacagcgagttgatgaa
gccctgacactgctggacagggttcaagatctcttgccaaaggattcgtataaggatctc
cataaaaatgtcatctgtacatctggaatgatacagttctacagagaggcttttgtggag
gcaaaggagctttttattaaaggtgaattagacccaagggaaatcattagcctttatcca
gctatgcccgtgagtgaagactttacacctcagacaacatcagttagcaatgccaaggac
ctgtggacgttaagtcgagacgacaagacgagatttcagcaatacctaagctttttggat
gacttcttgatagaagtcaggccaacaggacagggccaaatatgttctcgagacattgac
tctgcgctctttaagttgtatttggaacaagcagaatatgaaaaactggaccagcttgtg
tcgtctcagaatgactgtaacctccaaatgtgtgtgcctgacttggagcaacacaaaagg
tttttcacacttggattgctctatcaaagccaaggccagcatttcaatgcgattcagacc
tgggttaaaattgtggaggaccagagcgaagaccccttacatattagtgtcttccagcac
atagttaatactctctcaaatctgaaacataaacccatcatctggaagtttgtagactgg
gttcttcagagagaccaagaggctggaatactgatctttacaaagatgcatgcaagcaac
cacattatgtttgcaccggaggaagtccttaccattatcaccaactatgcagttgccatg
atgctttacttggaatttttagtcaacgaattacacagcaaggaggaaaagcatcacacc
atgctcatctcatcatacgtcaaatggatactgcagtcaatcgaggctgactacagtaat
gaaaccagcagggaagagatgagacacaaactacagatgttcctctggcaatcgtcttta
tataatgctgatactatatatgagcaaatatcatcttcgtctcttcacgtggagaaagcg
attttgcttgggaaatctggtaaacacaaaaaggccctgcaggttttggtccatgaagaa
aaagaccagcaggctgctgtaagctactgttggaggacctctgctggacgagacaggaag
ttcacacagggaatgttcctcaccctgcttcaaatctacctcgagtccactcatcatgtg
atcgcagccgtggacctgctgaaccaaaatgcagcgtcttttgatttagtgagcgtgttg
agggtgctgccgggctcctggtctctcaaactggtcctgcggttcctgtgtgaatcaatg
agaggaacggtgcatgaaaaaagaatgagaggtttggagatgagcctagccaaggtggaa
actctaagatacaagcatgtctggatggaagcaaagcatgaaaaaatcagagttgacaga
ggatgtgtttgccattcatgccagaaacgtctaacagggcccgagttcctgcgtaggccg
acaggagagctgacacacgtttcctgtcatggtggtgaaagcggtcactga
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