KEGG   Pimephales promelas (fathead minnow): 120479417
Entry
120479417         CDS       T08155                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
pprm  Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pprm01009]
    120479417 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pprm03036]
    120479417 (kdm5c)
Enzymes [BR:pprm01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     120479417 (kdm5c)
Protein phosphatases and associated proteins [BR:pprm01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120479417 (kdm5c)
Chromosome and associated proteins [BR:pprm03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120479417 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 JmjN PHD Aida_N XkdW
Other DBs
NCBI-GeneID: 120479417
NCBI-ProteinID: XP_039527766
LinkDB
Position
Unknown
AA seq 1571 aa
MDGGEEFIPPPECPVFEPSWEEFADPLGYIAKIRPIAEKSGICKIRPPPDWQPPFAVEVD
SFHFTPRIQRLNELEAETRVKLNYLDRIAKFWEIQGSSLKIPNIERRILDLYSLSKIVTE
EGGFEAVSKERRWARVAQKLGYPPGKNIGSLLRSHYERIVYPFEMFQSGASLPPCKPKPF
DSDEIDREYKPHSIPLRQSVPPSKMNSYGRRANRLQPEGPEDPTHHPLTTGSQNISSPEP
TEEDIEKNPELKKLQIYGAGPKMMGLGLVARDKTRKKDELPQTVIVRDSVASVKDEPAET
PVMKSDPDIPPPPPNLIIKEDVDDDKSHVGDSNDPGDEPCTKMTMRLRRNLNNSQFMDSF
VCRMCGRGDEDEKLLLCDGCDDNYHTFCLIPPLTDPPKGNWRCPKCIAEECKKPSEAFGF
EQATREYTLQSFGEMADTFKADYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIH
SKEFGSGFPVNNGKRHLTDEEEEYARSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVG
MVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSSSAEKLEEVMKKLTPELFECQPDLLH
QLVTIMNPNILMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPT
GRSCIEHYRWLRRYCVFSHEELTCKMAACPEKLDLNLAAATHREMFIIVQEERKLRKSLL
ERGIKEAEREAFELLPDDERQCDKCKTTCFLSALACSNCPERLVCLYHAQDLCSCPSEKL
YLRYRYTLDELLAMLHRLKVRAESFDSWANRVKEALEQEEGNKIDIKELEVLKEEAADKK
FPNNELLQRLNTVLTDISKCESRSTELLSNSQSSKMSLEELRTLVDTMQNLPCVMKPQEE
VQALLQKIEEFESRAQALVNSAEGEWKQDSPLPPAAEIQALLEEGASLPVVAPACELLSG
LQEQGRWLGEVRRTLGPEGSEVTLAVLRNLMEAGCNVPQSISVETAMAELQELLTIAERW
EEKAQICLEDRQKHHLSTLEAIVNEAQLIPVQLPNILSLQACLSRARAWVTDLEEIQNGE
HYPCLDDLEGLVAIGRDLPVKMEELKQLELQVASAHSWREKASKTFLKKNSQHSLLEVLC
PCVEKSKKREENSLGTEADSDVNVLGLTAQDLRDPGAIVMAFKEGERLEKEAILRLQQVN
LTKPGVEKGASGDQNGINLETKQSDSMETDTPLDSDSPVLLNGGSAPSLNPSQSVCVCNG
PPHPLLHRCHLCKDWFHGGCVPFPPLLGSSDTHPIKPLCWWDWNTRFLCPRCQRSRRPRL
ETILALLVALQRLPVRLPEGEALQCLTERAINWQGRAKQALDTPEVQRALESMQEVKEEM
VSVKEEEPVEKKKWNGDAVIVLSDSEETEDIIDLTEDVNSPKKSEEKAANGTSSGCENGI
TRKSSTHDVTGVESLSSLVSCLKGPVIELSTSTREQLEELQLEGDLLEVTLDQTHTIYRI
LQAASQPPHDALHTLIQIELQEQRSSGRGNKSKDTKRKRKSQKTEGGTKSTEASECKKTR
PVSHTPPTEIW
NT seq 4716 nt   +upstreamnt  +downstreamnt
atggatggaggggaggagtttattccgccgccggaatgtccagtgtttgaaccgtcatgg
gaggagtttgcagatccactgggatatattgccaaaatccgcccaatagcagaaaagtct
ggaatatgcaagattcgcccacctcccgactggcagccaccgtttgccgtggaggtggac
agtttccatttcactccacgtattcagaggctcaatgagcttgaggctgagacaagagtg
aagctcaattatctggacagaattgccaagttctgggagatacagggatcctccctgaag
attcccaacatagaacgtcgtattctagatctgtacagcttgtccaagattgtgacagag
gaaggaggttttgaggcagtaagtaaggagagacgctgggcacgcgtggcacaaaaactt
ggttatcctcctggcaaaaacattggctctctcctgaggtcccactatgagaggatcgtc
tatccatttgagatgttccagtccggagccagtttaccgccatgcaaacccaagccgttt
gacagtgatgagattgaccgggaatacaaaccacactccattcctctacgccaatcagtc
ccgccatccaagatgaacagctatgggcgacgagccaatcgtcttcagcctgagggtcca
gaggatccaactcaccaccctcttacaactggctctcagaacatctcctcgcctgagcct
acagaagaagacatagagaagaaccctgagctgaaaaaactacagatctatggggctgga
cctaaaatgatggggctgggtcttgtagctcgagacaagacgcgaaagaaagatgaactg
ccgcagacggtaatagtgcgggacagtgttgcatctgtgaaggatgaaccagcagagacg
ccggtcatgaaatcagatccagacattcctccaccacccccaaatctcatcatcaaggag
gatgttgatgatgacaaaagtcacgttggcgattcgaatgaccccggcgatgaaccctgc
actaagatgaccatgagactccgacgcaacctcaataactcacagtttatggactcgttt
gtgtgtcggatgtgcggacgcggggacgaggacgagaagttgctgctctgtgatgggtgc
gatgataattatcacacgttctgcctgatacctcctctcacagacccacccaagggcaac
tggcgctgtcccaaatgtatagcagaggagtgtaaaaagccatcagaagcatttggtttc
gagcaggccacgcgagagtacacgttacagagcttcggcgagatggccgacacttttaaa
gccgactacttcaacatgcccgttcatatggtgcccactgagctggtcgaaaaggagttt
tggaggttggttagcagtattgaagaggacgttactgtagaatatggtgcagatattcac
tcaaaggaatttggtagtggttttcccgttaacaacggcaagagacacttaacagatgag
gaagaggaatatgcccgcagcggctggaatctgaacgttatgccagtgttggagcagtca
gtattgtgccacattaatgcagatatctcaggcatgaaggtgccatggctgtatgtgggc
atggttttctccgctttctgttggcacatagaggaccactggagctactctatcaactat
ttgcactggggtgagcccaaaacatggtatggtgtgccatcatcatctgctgagaagtta
gaggaggtgatgaagaaactcacacctgagctcttcgagtgtcagccagacctgctccac
cagctggtcaccatcatgaacccgaatatactcatgagtcacggagtgccggtggttcgg
accaatcagtgtgctggggagttcgtcatcacttttccgcgagcttatcacagtggtttt
aatcagggatataactttgctgaagcagtcaacttctgcactgcagactggctgcccaca
gggcgctcctgcatcgagcattaccggtggctgaggcgctactgtgtgttctctcatgag
gaactcacctgcaagatggcggcgtgcccagagaagctggatctgaacctggctgccgcc
acacacagggaaatgttcatcattgttcaagaggaaagaaaactacgcaaaagcctgctg
gaaaggggcattaaggaagctgaaagggaggccttcgagttactgcctgatgatgaaagg
cagtgtgacaaatgtaaaaccacctgcttcctctcagccctggcgtgttcgaactgcccg
gagcgtcttgtctgcctctaccatgcacaggacctctgctcttgccccagtgaaaaactc
tacctcaggtatcgctatactctggacgaactcttggccatgttgcatcggctgaaagtt
cgggctgagtcttttgactcatgggccaaccgagtgaaggaagctctagaacaggaagaa
ggcaacaaaatagacattaaagaactggaggttttgaaagaagaggcagctgacaagaag
ttccccaataatgagctgctccagcgcctcaacaccgtcctcacagacataagcaagtgt
gagagcagaagcacagagctcctcagcaacagccagagcagtaaaatgagtctggaggag
ctgaggacgttggtggacaccatgcagaacctgccctgtgttatgaaaccgcaggaggaa
gtgcaggcgctattgcagaagatagaggagtttgaatcccgtgctcaagctctggttaac
agtgctgagggcgagtggaagcaggactctcctctgcccccggccgccgagatccaggcc
ttgctggaggagggagcgtcgttgcccgttgttgccccggcatgtgagctcttgagcggg
cttcaggagcagggtcgctggctgggagaggtcaggcgaacattagggccagaggggagc
gaggtgactctagctgtgctgaggaacttgatggaggcgggttgtaacgtaccacagagc
atatcggtggagactgccatggctgaactgcaagagctactgactatagccgagcgctgg
gaggagaaggcacagatctgtctggaggacaggcagaaacaccatctgtcgacgctggag
gccatcgtgaacgaggctcagctaataccagtgcagctgcccaacatcctgtccctgcag
gcctgcttaagccgagctcgcgcttgggtcacggatctagaggaaattcagaacggagag
cactacccgtgtctggatgacctggagggtttggtggccattgggcgggacctgccagtg
aagatggaggagctgaagcagctggagctgcaggtggccagcgctcactcgtggagagag
aaagccagcaaaaccttcctgaagaagaacagccagcacagtctgctagaggtgttgtgt
ccatgtgttgagaagagcaagaagagggaggagaactcattgggtacagaagcagattct
gatgtcaatgtattaggcctcactgctcaggaccttcgagacccaggagctattgtgatg
gcattcaaagagggggagcgtttggagaaagaggccattcttcgacttcagcaggttaat
ttaactaaacccggagtggaaaaaggagcaagcggtgaccagaacggcatcaatttggaa
acgaaacagagtgactctatggagacagatacgcccctcgactcagacagtcctgtactg
ctgaatggtggctccgccccttccctcaaccctagccaatcagtatgtgtgtgcaatggt
ccgccccaccccttgcttcaccggtgccatctgtgcaaagactggttccacggaggttgt
gtgccctttccacccctgctgggctcctccgacacgcatcctataaagcccctttgctgg
tgggactggaacacacgtttcctctgtccgcggtgccaacgatcacggcggcctcggcta
gaaaccattctagccctgctggtggcgctgcagaggttacctgtacgcctgccagaggga
gaggcgttgcagtgtcttacagagagagccattaactggcagggtcgagccaaacaggca
ctagacactccagaagtacagagggcgctagagagtatgcaggaagtgaaggaggaaatg
gtcagtgtaaaagaggaagaaccagtggagaaaaagaaatggaacggagatgctgtaatt
gtgctgtctgactctgaggaaacagaagatattatcgatctgacggaggatgttaactct
ccaaaaaagagtgaagagaaggctgccaatggcacatcgtctggctgtgagaatggaatt
accaggaagtcaagcactcatgatgttacaggggtggagtctctgtcgtcactagtgtcg
tgtcttaaagggccggtgatcgagctgagcacatccactagagaacagctggaggagctt
cagctagaaggggacctgcttgaggtcacgcttgaccagacacacaccatttataggatc
ctacaggcggcgtcacagccgccccatgatgctctgcacacactcatacagattgagctg
caggagcagagaagctcaggtcgtggcaacaagtcaaaggacaccaagaggaagagaaag
agccagaaaactgaaggcgggactaaatccacagaggcttctgaatgcaagaagacaaga
cctgtcagtcacacaccacccacagagatctggtga

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