Pimephales promelas (fathead minnow): 120479660
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Entry
120479660 CDS
T08155
Symbol
cdhr1a
Name
(RefSeq) cadherin-related family member 1 isoform X1
KO
K16501
cadherin-related family member 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120479660 (cdhr1a)
Cell adhesion molecules [BR:
pprm04515
]
Cadherins
Cadherin related
120479660 (cdhr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
DUF4834
Motif
Other DBs
NCBI-GeneID:
120479660
NCBI-ProteinID:
XP_039528277
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MLCFIRMKNAMGIQFSSFLLLAHFCFAQADYAPYFYDNGPSSNNGNMAMFNLSEDTPKGT
QIYIFNGTDPEGQPVKYGMTFEPGYKEYFRVHPKSGVVTLIEELDREAQDEIEFFVSISD
GLNKVVEKVSVIVTDANDERPQFQNMPSIVDVPENTTSGSSIYKVEAVDRDIGSGGSVTY
FLQSSEPNTKFSIDHHSGVLRIKPGEALDYEKFRTHFITVVAKDGGGVYKGKQQVMSSSA
TLTINVIDTQDTPPVFVGTPYFGYVYEVSSPGSEIFTVFAQDGDMDNPNPIVYSLESGAD
GVFSINKTSGCITLNVYPADLRKEVFNIKVKASEVSPEGKRLDFAVTTVTIKVVDLNNHP
PTFFGENGPQNVFELTMYEHPPEGEFLRGLKITVNDSDQGSNAKFHLRLVGPGRMLRVVP
QTVLNEAQVTVLVEDSAAMDFEKSQFLTFKLLAIEIDTPERFSATADIIIHLLDTNDNTP
KFTSDFYIARIPENSPGGSNVVSVTATDPDSGLWGVVKYSIYGSGADLFLIQADSGIIYT
QPWASLDAEVKSKYNFYVKAEDTEGKYSLAEVFVTIIDLNDHSPEFNENSLEKTMVIGAP
VKIEAIDEDAEEPNNVIEYSITKADPDNIFDIDADTGEIKLKPYIKSMDIVHNITNQKDC
TWSVVVQAKDRGSPSFSTTTVIKIDITEATQLKGPLTSFLLKSRENPMHFLGLISGVIII
MVFVTVLISTIIFVRNIKSNKILPSRRIIRRKRKFRRQDDFQQPFREEQENPTSENINCN
NNSKVCFHHRAPPSPPNMPPPLPSHYRHGDREWAVPTVSASVASKTKRKSHTSKENPVNT
ALVSELKLKLEQKNMANRY
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgctttgctttattaggatgaagaatgctatgggaatacagttttcatcatttcttctg
ctagcgcatttctgctttgctcaggctgactatgcaccctatttctatgataatgggccc
agcagtaacaacggtaatatggcgatgttcaatctctcagaggatacgccaaaaggaaca
cagatatacatttttaatggaactgatcccgaaggccagccagtaaagtatggaatgacc
tttgaacccggatacaaagaatattttcgtgttcatcccaaatctggagtagtaactcta
atagaggaactcgacagagaggcacaagatgagattgaattctttgtcagcatctcagat
ggccttaacaaagtagttgaaaaggtttcggttattgtcacggatgccaatgatgagaga
ccacagtttcagaacatgccttccatcgtagatgtgccagagaacactacatctgggagc
agcatctacaaagtggaggcagtggacagagacatcggctctggaggatcagtcacttac
ttcctccagagcagtgaaccgaacacaaagttttccatcgaccaccatagtggcgtgctg
cgaataaaaccaggcgaagccctcgattatgagaaattccgcacacatttcatcactgtg
gtggcaaaggatggaggtggcgtttacaagggcaagcaacaagtaatgtcatcatcagcc
actttgacgataaatgtgattgacactcaagacactcctcctgtgtttgttggaactcct
tactttggttatgtctatgaggtctcttcacctggatctgagatatttacagtttttgcc
caagatggagacatggataatccaaatccaatcgtatattcattagagtctggagcagat
ggggttttttccatcaataaaaccagtggatgcatcactctgaatgtgtatccagcagac
ctgaggaaggaagtctttaatattaaagtcaaggcttcagaggttagtccagaggggaaa
cgcttggactttgcagtcactacagtgaccattaaggtagtggatctgaacaaccatcca
cccacattctttggagagaatggaccccagaacgtgttcgagttaactatgtatgagcat
cctcctgagggagagttcctgaggggcttgaaaatcacagtcaacgactctgaccagggt
tcaaatgccaaattccacctcagactggtgggcccaggtcgcatgttacgagtggtccct
caaaccgttctgaatgaagcccaagtcaccgtccttgtagaggattctgctgcaatggat
tttgagaaatcacaattcctgacatttaagctcctcgctattgagattgacacacctgag
aggttcagtgccacggcagacataatcattcatctgctagacaccaatgataacactccg
aaattcacttctgatttttacatcgctcggattccagaaaattcacccggaggatccaat
gttgtgtctgtgacagccacagatcctgattctggtctttggggtgtggtcaaatactcc
atctatggctcaggagccgacctgtttctcattcaggctgattctggaatcatctacact
cagccctgggccagtctggacgccgaggtcaaatccaagtataacttctatgtgaaggct
gaagacactgaaggaaaatacagccttgcagaagtcttcgtcaccattattgacctcaat
gaccattcaccagagtttaatgaaaactctctagagaaaacaatggtgattggtgcaccg
gtgaaaatagaggcgattgatgaagatgcagaagagccaaacaatgtaattgaatactcc
attacgaaagccgacccagacaacatatttgacatcgatgcagacacaggagaaataaag
ttgaagccgtacatcaagtccatggacatagtccacaatatcaccaatcagaaagactgt
acttggtctgtggttgttcaggccaaagacagaggttcaccatccttcagcaccaccaca
gtgataaagattgacatcacagaagcgactcaactcaagggacctttgacgtccttttta
ttgaaaagtagggaaaatcccatgcatttcctaggcttgatcagtggtgtcattataatc
atggtttttgtgactgtcttgatatctactattatattcgtgagaaacatcaagtccaac
aagatcctaccctcccgtcgcatcatacgcaggaagcgtaaattccggagacaagacgac
ttccagcaaccgttcagagaggaacaggagaaccctacatctgagaatatcaactgtaac
aataacagcaaagtgtgttttcatcatcgagcgcctccgtcgcctcctaacatgcccccg
ccgttgccaagtcactatagacacggtgaccgcgagtgggcggtacctacagtgtccgcc
tcggtggcctccaagacaaagagaaaatctcatacgagtaaagaaaatcctgtcaacaca
gcactggtttctgagctcaaacttaaactggagcagaaaaacatggccaaccggtactga
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