KEGG   Pimephales promelas (fathead minnow): 120480040
Entry
120480040         CDS       T08155                                 
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
  KO
K07603  collagen type XVII alpha
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm04382  Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    120480040 (col17a1b)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 120480040
NCBI-ProteinID: XP_039528881
LinkDB
Position
Unknown
AA seq 1557 aa
MDDLRQERNYPGGSSGDRGFTETISTTRITALPPRGFNASANKGMSSTSGSPGLEKNILT
QNSSSFFSSSSVGVSADGLGSGSREYLIEESSVSKSKKAGGTYGGFESVSGSGSGSGSGS
GSGSGSGSGSGSGSGSGTRLGMRSSSTDGMRRTQDSPLFLERKSKTTHSRRYDGSSSENS
SPEITRKDYSSRGRSQSRETEIRTRLQSASPSTRWTELDDVKKLLKGSRSASVSPTRSPS
SSPLPIPRKATTLDTKISTKQVEQYDSTILDADLASYTWNSSLPSTVSTGPGAAYGFHHN
TNNMSTGASLVSSTSPSSLSVYGFHNNLAPASGVLTSSGVNTVSGYGVQKNYSTSPNSTF
AVSTGVSTAGYGVQKNYSSSPNSTFAVSTGVSTAGTGTRTLNENVSKRYLTLEKENIPAK
RDTDELILTKDSGKHFTNSAPNGTAGSYSDVSVKKETLVTSYSESVPVKSSSGAHYVTSV
STKDKATYAEIQKAKLEDEDDCKCGGGLCGCGPNCCSWWKWLLGFLLSLLLLLGLLFGLI
ALSEEVKKLKSRVSTLEGISSSMNARTSRLSAPIDDMDIYKDAGSKAAYANSLDSAVYSD
SSVLQRNVQQILRAELQSEAMKAFLASSVKAERGLPGPKGDNGSPGTRGDNGFPGLPGPA
GMPGNPGREGQKGAKGSAGEHGAEGPPGFRGRDGQPGPRGDPGPPGAGEKGERGLPGSPG
QVGAPGPKGASGLHGEQGPQGFRGEPGTVGPKGDRGLPGPPGSKGDHGDIGVNGLPGIPG
AAGRQGPAGEKGAKGEPGPQGADGEKGQRGESGSIGLPGIRGPPGPHGDSGQPGIQGPPG
LPGNPGQPGAKGETGAAGRVINAAGSSSVAIPGPPGSPGPPGPPGSPGLSGPVGPAGHPG
QPGLKGDKGDQGEPGIAVNTGETLVSTRAERQYGAANVAVTGPPGPPGPPGPPGRPGDTR
AGPPGPPGLPGSAGYGRPGPKGDKGDPGNFVPNSGTFFAGPPGPPGPTGPKGATGAQGPR
GYQGESGQPGLPGSPGRVVSEYGVAQGPPGPPGPPGPPGREGRKGDPGVPGLSASQGESR
VSVSGAVAVGPPGRPGPPGPPGPPGATGHSGGSHFASDYRRYIAEYMQSDSMRQHLSSIQ
GLPGPQGPPGPPGASVSVEDIASRVIAYIQRSGISGSSISQGAQGPPGLPGPPGPPGSIT
ADYIISLLQREDVRRYVVGPPGPPGSPGISASTFNAQEVANYAIRIMNDQGMTGRPGPPG
PPGPPGQAGATYSDITALIQRSGLGAGVGRPGPPGPQGIQGPPGPPGATGGSSSALSGYK
LEDIQLYLQKSGFRGPPGPPGPQGPPGDTRGLVSYSGSSAREQIRAELQDYLNSDTMRRY
VQSPPGPPGPPGQKGERGDPGHSYQNARSQQRFGTEISEPVDYSNVAIKVTDYIKNQGLL
QDLTEGYWRTQAGRIQGPAGPPGPPGPPGYSRVIGAYGNVTADLMDFFKTYGTIPGPPGR
PGHKGDRGYPGSKGEKGDTGSSGIPGLPGQRGLEGPRGEKGEKGDIQTGRWVRTTGV
NT seq 4674 nt   +upstreamnt  +downstreamnt
atggatgatttaaggcaggaaagaaactatcccggagggagttcaggagacagaggattc
actgaaacaatctctactacaagaattacagccttaccgccacgtggcttcaatgcatcc
gccaacaagggcatgtcaagcacctccgggtctcctggcctggagaagaacattttgact
caaaacagcagttcttttttctcatcatcatctgtgggggtgagtgcagatgggttaggc
tctggatcaagggaatatctgatagaggagtcatctgtgagcaagagtaagaaggcaggt
ggtacttatggaggatttgagagtgtctctggatctggatcaggatctggatctggatca
ggatctggatctggatctggatctggatctggatcaggatcaggatcaggaacaaggctg
gggatgagatccagctccactgacggcatgagaagaacacaagactccccattgtttctg
gagaggaaaagcaaaaccactcattcacgtcgttatgatggaagctcaagtgaaaactca
tccccagagatcacaagaaaagactacagttcaagaggaaggagtcaaagcagggagacg
gaaatcaggaccagactgcaaagtgcatctccctccactagatggactgagctggatgat
gtaaagaagctgttgaaggggtcgcgctccgccagcgtcagccccacacgctctccctcc
tcctcccctcttccgatacctcgcaaggccaccaccttagacaccaagatatccaccaag
caagtcgagcaatatgacagcactattcttgacgctgaccttgcctcgtacacatggaac
tcctcactgccctcgacagtttccactggacctggtgctgcttacggcttccaccacaac
accaacaacatgtcaacgggagcttcgcttgtcagcagcacatcaccatcctccttatca
gtgtatggcttccacaacaatttagctcctgctagtggagttctaacatcgagtggagtt
aacacagtttcaggatatggagtgcagaagaattattcaacaagtcccaacagcactttt
gctgttagcacaggggtctccactgcaggatatggtgtgcagaagaattattcctcaagt
cccaacagcacttttgccgttagcacaggcgtctccacagcaggaactggtacaaggacc
cttaatgagaatgtgtcaaagagatacctgacgctggagaaggagaacattccagcgaag
agagacactgatgaacttattctgaccaaagacagtggcaaacactttaccaacagcgcc
cccaatgggacagcaggctcatattcagatgtgtcagtgaagaaggaaactttggtgacc
agctattctgaaagcgttcctgtgaagtctagctctggcgcacattatgtgacttcagtg
tcaacaaaagataaagctacgtatgcagagatacaaaaggctaagcttgaggatgaggat
gactgtaagtgcggagggggtctctgtggatgtgggccaaactgctgttcctggtggaag
tggctgctgggttttctgctcagcctcctgcttctcctcggccttctgtttggactcatt
gctctatctgaggaggtaaagaaactaaagtctcgtgtcagcactcttgagggaatatct
tcctccatgaatgcccgcacaagtcgcctgtctgctcccattgatgacatggacatatat
aaagatgcaggaagtaaagcagcatatgctaattcactggattctgcagtttattcagac
agttctgtactgcagagaaatgtacaacaaatactgagagcagagctgcagtctgaagca
atgaaagccttccttgcttcttcagttaaagctgaaagaggacttccagggccaaaaggt
gacaatggatctccagggacgaggggagacaatggttttccagggctgccaggtccagca
ggaatgccaggaaatccaggaagggaaggacaaaaaggggcaaaaggaagtgcaggtgaa
catggtgcagaaggacctcccggattcaggggaagagatggtcaacctggaccccgtgga
gacccaggacctcctggagcaggagagaagggtgaaaggggtcttcctggctctcctggt
caagttggtgcacctgggcctaaaggtgctagtggtttacatggtgaacaaggccctcaa
ggcttcagaggtgaacctggcactgttggacctaaaggtgatagaggacttcctggtcca
cctggtagtaaaggtgatcatggtgatataggagtcaatggattgccgggtattcctggt
gctgcaggacgacagggaccagcgggtgagaaaggagctaaaggagaaccagggcctcaa
ggagctgatggtgaaaagggccagagaggtgagtcaggctcaattggcttgccaggaatc
agaggaccgcctgggccacacggtgattctggacaaccagggattcaaggacctccaggc
ctacctggcaatcctggtcagcctggagctaaaggtgagactggtgcggctggaagagtg
atcaatgcagcaggttctagctcagtggcaatcccaggaccgcctggaagccccggtcct
cctggcccacctggctcaccaggactctcaggtcccgttggcccagctggacatcctggt
cagcctggtcttaaaggtgataagggagatcaaggagaaccgggtattgctgtgaacact
ggtgagactttggtttcaacgcgtgcagaaagacagtatggggctgcaaacgtcgctgtt
actggaccacctggtcctcctggtcccccagggcctcctggacgtccaggagataccaga
gcaggtccgccgggaccaccaggtttaccaggctcagcaggatatggcagacccggtcct
aaaggagacaagggagatccaggaaactttgtgcctaattcaggaacgttttttgcagga
ccaccagggccaccaggacccacagggcctaaaggagcaacaggtgcccaaggtccacga
ggatatcaaggggaatcaggtcagcctggccttccagggagtccaggtagagttgtctct
gagtacggtgtcgcccaagggccacctggacctccagggcctcctggaccgcctggacga
gagggccgtaaaggggatcctggagtaccaggtttatcagcatcacaaggagagtcaaga
gtctcggtatcaggagcagttgcagtcgggcccccggggcggcctggtcctccaggacct
cctggtccacccggtgctacaggtcattccggtggatcccatttcgcctcagactatcgc
cgttacatcgcggaatatatgcaaagtgacagcatgaggcagcatttgtctagtattcaa
ggattaccaggtccacaaggtccaccgggtccacctggagcttcagtgtctgtagaggac
attgcatctagggtcatcgcttacattcagcgctctggaatcagtggtagcagtattagc
caaggtgctcaaggtcctccaggacttcctggccctcctggcccacctggaagtataact
gctgactacatcatttcccttttacagagagaagatgtgaggcgttatgtggttggccct
ccaggaccaccgggttcaccagggattagtgctagtacctttaatgcacaggaagtggca
aactatgctatcagaataatgaatgatcaggggatgacaggcagacctggaccaccagga
cctcctggcccacctggccaagcaggtgctacctacagcgacataacagctcttattcag
aggtcagggcttggggcaggcgttggacgtccaggaccccctggtcctcaaggaatacag
ggaccccctggtccgcctggtgccacaggaggcagctcctcggcactctcgggttacaaa
ctggaggacatccagctctaccttcagaagtctggttttaggggacctcctggtccacca
ggaccccagggtcctccaggtgacactaggggccttgtatcatattcaggatcttctgcg
cgagaacagatccgtgctgagctgcaggattacttgaacagtgacactatgaggcgctat
gttcagagtccccctggtcctcctggaccccctggccagaagggtgaacgtggtgacccc
ggacacagttatcagaatgccagaagccaacaacgctttggcactgagatcagtgaacca
gtggactactccaatgttgcaataaaagtaactgattacattaaaaatcaaggtctactg
caggacctgacagagggatactggagaacacaagcaggaaggatccaaggacccgctggg
cctcctggtccaccaggcccacctgggtacagccgtgtgattggtgcctatgggaatgtg
actgcagacctcatggacttttttaaaacatatgggaccatcccagggcctcctggcagg
ccaggacacaaaggggacagaggatatccaggatctaaaggagaaaaaggggacacgggg
agctcagggataccaggcctcccgggacaaagaggactggagggaccaaggggagaaaag
ggtgaaaaaggtgatatccagactggtagatgggtacggaccactggtgtgtaa

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