Pimephales promelas (fathead minnow): 120480053
Help
Entry
120480053 CDS
T08155
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pprm04121
]
120480053 (zswim8)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
120480053 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_ZSWIM8
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
120480053
NCBI-ProteinID:
XP_039528903
LinkDB
All DBs
Position
Unknown
AA seq
1950 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKE
ESHTGLKQHEDGQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEED
IRLYSCLANGSPDEFQRGEQLYRVRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFD
RCRITSCSCTCGAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYL
ISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIK
KTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFK
RRDSNAAPLLEILTEQCLTHEQIIGWWYSVRTSASHSSASGHTGRSNGQTEVAAHACASM
CDEMVVLWRLAVLDPTMSPQRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAV
ECCYFNWEVAYPLPGITYCSADKKNASFCWARAMQQQRGIKAGTGGESGDGTRGGTSEAS
SSEHKSRSNSHLPQQEVAVRPKETIVSKRKGVSGVNSGGVLVCLGGRVSLSLQEGGKGMY
KANSSSPSAGSKAKLTQSNKGCGSSSGVSGKHPGAKRRTSSEDSSLEPDMAELSLDDGSS
LALGAEACNTFDFLPPPPEMLPSPSPLLREPLKYTSGGVSKERAFETKHVAHAAMPSAAD
AHVCFSKESSIATSVVAAMEKEVEVEADLDEAGGDEDPVDDALPCAALPSQALRGRREGD
GSGASGAPGPQAAEAAAGADAVGEDDYQAYYLSAASEEGADRGVADGNHEEEPDIFAGIK
PLEQEGRMEVLFACAEALYAHGYSNDACRLAVELARDLLANPPDLKVEQPQTKGKKSKVS
TSKQTQVATNTLSKVAFLLTVLSERLELHNLAFNTGMFSLELQRPPASTKALEVKLAYQE
SEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVVSPTG
SRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITY
KDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPATSSQKSPSKHATHGASGAAGGVSK
HTPSATSAAVQGVTGGGAAGQQGGLAAGGVQSTATGEGISDNRDQEGAQSTSCEQQSEAA
PFKPEGTVPSRLALGGRGAYGTRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTLSRRP
LRGGWTAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKSTDTSRYKGRRPECH
APHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHLCAFEIG
LYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTPPEVASLADR
ASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNVMLEKACMAVEEAAKG
GGVYPEVLFEVAHQWYWLYEQTVGGGSGAQREGSGRCGANGGARRTAPEGGCGILDNNGV
LDSSGVSAVTTTVTAAAVVPVISVGSTIYQSHGLPGSAMAHTAGLHPYTTIQTHLPTVCT
PQYLGHPLQHVPRPAVFPVSGTAYPQVYDSRKAYQAGFKSICLSSQGMHPAFIGAQYPFS
VATGPHPPMAATAVTFPGVPVPSMTQIAVHPYHTAEAALPLSTTVTAGVHSGATIQAIQG
TSLPGLSSQPASLVSAPFPVEDEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHP
NNFSRSPPYTEDVKWLLGLAARLGVNHVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAH
IHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQ
FNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgctgagtgggaagacggagagaggttctcctttgaagattcggac
cgttttgaggaggactccctgtgctcattcatatcagaggcggaaagcctctgccagaac
tggagaggatggaggaaacagtctgccggcccaaattcacccactgtgaagattaaagaa
gaaagtcatacaggcttgaaacaacatgaggatggacaggtcatccctctggtggagctg
tcagccaagcaggtggcattccatattccgttcgaagtggtggaaaaggtctatcctccc
gttcctgagcagctccaattgcggattgcctactggagctttccagagaatgaagaggac
atcagattatactcttgtttggccaatggcagccctgatgagttccagcgtggtgagcag
ctctatagagtgagagctgttaaagaccctctgcagataggtttccacctcagtgccaca
gtagtgtcgccccaggccggccaatcaaaaggagcctataatgtggctgtaatgtttgac
cgctgccggatcacttcctgcagctgcacctgtggagcaggagccaaatggtgtgcccac
gttgtggccctctgcctcttcagaattcacaatgcttctgctgtgtgtcttcgagcacct
gtgtcagagtccctgtccaggttacaacgggatcaactccagaagtttgcacaatacctc
atcagtgaactcccacagcagatcttgccgacagctcagcgtcttttggatgagcttctt
tcttcccagtctaccgctattaacaccgtgtgtggagccccggatcctactgctggccct
tcagcgtctgaccagagcacctggtatctagatgagtccaccctaagtgacaacataaag
aagaccttgcacaagttctgtggtccctcaccagttgtgtttagtgatgtgaactccatg
tacctgtcctccaccgagcctccagcagctgctgaatgggcttgtctcctgaggcccctg
cgaggtagagaaccagagggcatctggaatcttctgtccattgtcagagagatgtttaag
cggagagacagcaatgctgcacccctgttagagatactcaccgaacagtgtctcacccat
gaacagatcattggttggtggtacagtgtgaggacatccgcctctcacagcagtgccagc
gggcacacaggtcgcagtaatgggcagaccgaggtcgctgcacatgcatgtgccagtatg
tgtgatgagatggttgtcttatggagactggcagtgttagaccctaccatgagtccccag
agacgcttggagcttgccgcccagctgaagcagtggcacctgaaggtaatcgagatcgtg
aaacgagggcagcaccgcaagtctctggacaaactcttccagggctttaaaccagctgtt
gaatgctgctacttcaactgggaagtggcctaccctttacctggcatcacctattgcagc
gcagataagaaaaatgcttccttttgttgggccagggcaatgcagcaacaacggggcatt
aaagctgggactggtggggaatcaggagatggtactcgtggtggaacctcagaagcttct
tcctctgagcacaagtctaggagtaactcacatcttccccagcaggaggtggctgtccgc
cctaaggagaccattgtgagcaagaggaaaggagtgtctggtgtgaacagcggaggcgtt
ctggtttgtctgggtggcagggtctctctttcacttcaggagggaggtaaaggcatgtat
aaagccaacagctcctctccatcagctggtagtaaggccaagctaacgcagagcaacaag
ggctgtggaagttcaagtggtgtcagtgggaaacaccctggtgcaaagcggcgaaccagc
agtgaggacagctctctagaacctgacatggcagagctgagtctggatgatggctccagc
ctggcgctcggggcagaggcctgcaacaccttcgatttccttcctcctcctcccgagatg
ttgccttcacccagccccttgctccgtgagccactcaaatacaccagcggtggcgtttca
aaagagcgtgcttttgagaccaaacatgtggcacatgctgccatgccctctgctgctgat
gcccatgtctgcttttcaaaggagagctccattgcaacctcagtagtggcagctatggag
aaagaggtggaggtggaggcagacctggatgaagccggaggagatgaggaccctgtagat
gatgctctgccgtgtgcggcgctccccagccaggctctgcggggccgcagagagggagat
ggaagtggagcttcaggggctccaggacctcaggcggctgaggcagcagcaggagctgat
gctgtgggtgaagatgactatcaagcctactatctcagcgctgcctcagaagagggagcg
gatcgaggggttgcagacggcaaccatgaggaagagccagacatctttgctgggatcaaa
cctctggaacaggagggcaggatggaggtactgtttgcctgtgctgaggctctctatgct
cacggctacagtaatgatgcttgccgactggctgttgaacttgctcgagatcttctggct
aatccgcccgacctgaaggtggagcagccacagaccaagggtaaaaagagcaaggtgtcg
accagtaaacagacgcaggtggccactaacaccctgtctaaagtagcctttctgctgact
gtgttgagtgagaggctggagctccataacctggccttcaacactggcatgttttccctg
gagctgcagagacctcctgcttctactaaagctctggaggtgaagctggcatatcaggag
tcagaggtagtggctctcctgaagaagattcctctgggtcttgtagaaatgacttccata
agggacagagcagaacagctccgggatggaaacttctgcgactatcgtccggtgctgcct
ctcatgctggcaagcttcatatttgacgtgctctgcacccctgtggtctctcccacgggc
tctcgacctcctagccggaaccgtaacaatgaaatgcctggtgatgaggagctgggattt
gaggctgctgttgcagctcttggtatgaagacaacggtcagtgaggcagagcatcctctg
ctgtgtgaaggcacacggagagaaaaaggagacttggctctagcactgatgatcacctat
aaagatgaccaaagcaagcttaaaaagattctggataaactccttgaccgtgagagccag
acccataagcctcagactctgagctcattttactctagcaaaccagctaccagcagccaa
aagagcccatccaaacacgccacccatggtgccagcggagctgcgggtggagtgtcaaaa
cacaccccttcagcaacatcagctgctgtgcagggcgtgaccggcgggggagcggcaggg
cagcagggaggtttagcggctggcggagttcagagcacagcaacgggagagggcatctct
gacaacagagatcaagagggtgcgcagtcgacctcctgtgagcagcagagcgaagctgca
cccttcaagccggaaggcacagtgcccagtcgtctggcactggggggccgcggggcatac
ggcacacgctgctggggatcacctgtacgacagaaaaagaaacacactggcatggcaagc
attgacagcagcgctccagagaccacctcagacagctctcctactctcagtcgacgccca
cttcgagggggttggacagctgcttcctgggggagaggtcaggacagtgatagcattagc
agctcttcatctgattcactcggctcatcgtcatccagtggctcacgcagagctggtgga
ggagccagagccaagagtaccgacaccagcaggtataaaggccggcggcctgaatgtcat
gctccgcacgtgcccaaccagccatctgaggcagctgcccatttttactttgagctggcc
aagactgtgctgattaaagctggaggaaacagctccacctccattttcactcaaccctct
gccagtggaggccaccaggggcctcaccgcaacctgcatctgtgtgcctttgagattggc
ctgtatgccctcggcctccataattttgtgtctcctaactggctgtcaaggacgtattcc
tcccatgtatcctggattacaggccaggccatggagattgggagtgctgccctcaacatt
ctggtggaatgctgggatgggcaccttactcctccagaggtggcgtcacttgctgaccgt
gcatcacgagcacgtgatcccaacatggtgcgcgctgcggcagagctggccttgagctgc
ctgcctcacgctcatgccctgaaccccaacgagattcagagagctctagtgcagtgcaag
gagcaggataatgtgatgctggagaaagcttgcatggctgttgaggaggctgcaaaggga
ggcggcgtatatcctgaggtcttgttcgaggtggctcaccagtggtattggctgtacgag
caaacagtgggtggtggttcaggggcccaacgagagggttccggccgctgcggggccaac
ggtggagcaaggagaacggcacccgagggaggctgcggaatcctggataacaacggggtc
ttggattcatcaggtgtctcggctgttactaccacagtgacggcagccgccgtcgtacct
gtcatttccgtcggctccaccatataccagtcacatgggctgccgggctcagccatggca
cacacggcaggtctgcatccctacaccaccatccaaacccatctgcccaccgtctgcacc
ccgcagtacctgggtcacccgcttcagcatgtcccccgtcctgcggtcttccccgtgtct
gggacagcctacccacaggtatatgactcgaggaaggcgtatcaagctggttttaagagc
atctgtttgtcttctcagggaatgcaccctgcttttattggtgctcagtacccattttct
gtggccactggccctcatcctcctatggcagcgaccgctgtcactttccctggcgttcca
gtaccgtccatgactcagatcgctgtccacccataccatactgcagaggcagccctgcct
cttagcacaactgtgacagcaggagtacactcaggcgccaccatccaggccattcagggg
acttctcttccaggactctcgtcccagccggcctcgctggtcagtgcgccattccctgtg
gaagacgagcagcacagtcaaccaatcagccagcagggcctgcactacctccactcggcc
tacagagtcggtatgctggccttggagatgttgggaagaagggcccacaacgatcatccg
aacaacttttcccgtagccccccgtacacagaggacgtcaaatggctgttgggccttgct
gcacgtcttggtgtgaaccacgtgtaccagttttgtgttggggcagcgaaaggtgttctt
agtccgtttgtcctgcaggagatcattatggaggctctgcagaggttaaaccctgcacat
atccacgcacacctccgcactcctgccttccaccagctcgtgcagcgctgccagcaggcc
tacttacagtatatccaccacaggctgatccatctgactcccgcagactatgacgacttt
gtgaacatcatccgaagtgcccgcggggcgttttgcctgacaccagttggcatgatgcag
ttcaacgatgtgctgcagaacctgaagaggggcaaacagacaaaagaattatggcagcgg
atctcgttggagatggccaccttctcaccatga
DBGET
integrated database retrieval system
