Pimephales promelas (fathead minnow): 120480308
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Entry
120480308 CDS
T08155
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120480308 (chd5)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120480308 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
Chromo_MIT1
HMG_box
AAA_22
Motif
Other DBs
NCBI-GeneID:
120480308
NCBI-ProteinID:
XP_039529280
LinkDB
All DBs
Position
Unknown
AA seq
1996 aa
AA seq
DB search
MPGSLSNEDEGQDDVDFEDDVPDEEEEGERQRSVPLSPLERFFSEDDSVKQHKKKKPSKI
MEGKEPKVKKKKKEGLPSGLDDMSDREDRGHRSGSESSTYSTLKKKKKKPKEKKERKTKQ
RKKEDDEDDDDDDDGNMKEPKSSSQLMQEWGLEDVQYAFSEDDYKTITNYKAFSQFLRPL
IAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSATAVAAAVAAAVETVNVAPPICIRSI
QQISPSGPIKKAKTKEGKGPGAKKKSKSVKETKKKGKPKKSKSKAGQGGKRKKGSSSEED
FLDDFSDFDDISIHSASVLSDTSAAPKKKSTRRGRKKRKREDGDGYETDHQDYCEVCQQG
GEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDEEEEDEVAGEEED
DHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKIL
HWAWGDPPLPPEVPPGQDGEKVDALAKIPLKGRPERQLFVKWAGLSYWHCSWVSELQLEL
YHTVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRRSKDPQYAAMEEQFYRYGIKPEWMI
MHRILNHSFDKDGDVHYLIKWRDLPYDQCTWETDDFNVPDYDSFKQAYWDHRNQVLGESY
HPLLFRKGKRLKEEGKRREPPPDTPVVDPTIKFEQQTWYIDDTGGTLHPYQLEGLNWLRF
SWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAP
DFYVVTYTGDKDSRAVIRENEFTFEDSAVKTGRKVFRMKKDTPIKFHVLLTSYELITIDQ
AILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFL
TPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS
PMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGS
YDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGG
ITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSR
AHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDIL
KFGTEELFKDDVEAARTMGDNKEGEEGSVIHYDDNAISKLLDRSQDATEDTEIQNMNEYL
SSFKVAQYVVREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRI
RKQVNYNDASQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLKSDRDKP
LPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAY
VSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKFSTP
DLIPVGLELKKLTESVSSDPNTPVPASPVPTQPSTPVPSDKTESMSGSQEDKEITEPEST
KSLDPEPAIPEPSPAPEKTSEGEESKSGSPEEKRIEENEKNDTLPVPSESSSNQAQPPTK
PSEQSANQTPLDCGKGKETSPERGENKPSPAKLDEKEQKPAIPDDLKSEEQIVSQLNGEK
DARDDTDESHRDDKNSVKTRFMFNIADGGFTELHTLWQNEERAAVSSGKMYDIWHRRHDY
WLLAGIVTHGYARWQDIQNDPRYTILNEPFKTEMHKGNYLEMKNKFLARRFKLLEQALVI
EEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVLN
QLEELLSDMKADVTRLPSMLSRVPPVSARLQMSERGILSRLTSRGNEPPPQQPFPQGSFS
CSQMYNSSFAGGFRGPGGTAMVNYSQMPLGPYVSVSSNGPPAPSSYLEKKSSDALRDVAT
PDLKSGKPSDVICIED
NT seq
5991 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcgctaagcaatgaagatgaggggcaagacgatgtggattttgaggacgac
gtgccagatgaggaagaggaaggtgaacgtcagaggagtgtccccttgtcgccgctagag
agattcttctctgaggatgattcggttaaacagcataagaagaagaaacccagcaagata
atggagggaaaggagcccaaagttaagaaaaagaagaaggaggggcttcctagcgggctg
gatgacatgtcagatagagaggatcgtggtcacaggtcggggagtgagagcagcacctac
agcaccctgaagaagaaaaagaagaaacccaaagagaagaaggagaggaaaacaaaacag
cgaaagaaagaggatgacgaggacgatgatgacgacgatgatggaaacatgaaggaacca
aagtcatccagtcagctgatgcaggagtggggtctcgaggatgtgcagtacgccttctca
gaggacgactataaaaccatcaccaactacaaagcctttagccagtttcttaggcccctc
attgccaagaagaaccccaagatccccatgtcaaaaatgatgacagtgcttggagcaaaa
tggcgagagttcagcgcgaacaacccttttaaaggcacctctgcaactgctgtggcggct
gctgtggcggctgccgtggaaaccgtcaatgtggctccgcccatttgtattagaagtatc
caacagatctcaccatctgggccaatcaaaaaagccaaaaccaaagagggaaaggggcct
ggtgctaaaaaaaaaagtaagtcagtgaaagaaacaaaaaagaaagggaaaccgaagaag
tccaagtcgaaagctggccagggtggaaaaaggaaaaaaggatcctcgagtgaggaagat
ttcctggatgacttttcagactttgatgacatcagcattcacagtgcctctgtactctca
gacacttcagcggcaccaaaaaagaagtcgacccgccgagggcgaaaaaaaagaaaaaga
gaggatggagacggctacgagacagaccatcaagactactgtgaggtttgtcagcaggga
ggagagatcattctatgtgacacctgtcccagagcatatcacctggtttgcctggatcca
gaactggagaaagccccagaaggcaaatggagctgcccccactgcgaaaaagaaggcatt
cagtgggaggccaaagatgacgaggaggaggaagacgaggttgctggtgaggaggaagat
gaccacatggagttctgcagagtgtgtaaggatggaggagagctgctgtgctgtgataca
tgcccttcctcttaccacatccactgtctcaacccacctcttcctgagattcccaatgga
gagtggctgtgtccacgatgcatgtgcccaccactaaaagggaaagtccagaagattctg
cactgggcgtggggcgatcctcctctaccacctgaggtcccccctgggcaggatggagag
aaggtggacgcgttggccaaaataccactgaagggccgtccagagaggcagctgtttgtg
aaatgggctggcctgtcctactggcactgctcctgggtcagcgaacttcagttggagcta
tatcacacagtaatgtaccgtaactaccagaggaagaacgacatggacgaaccgccaccg
tacgactatggctctggggaggaggagcttaacaacgagaagaggaggagcaaagaccct
cagtatgcagccatggaggaacaattctaccgttacggcatcaagccggaatggatgatc
atgcaccggattctcaaccacagttttgataaggatggagatgtacactacctgatcaag
tggagagatttgccatatgaccagtgcacctgggagactgatgacttcaacgtcccagat
tatgacagctttaaacaagcctactgggaccacaggaatcaggtgctcggtgaaagttat
caccctctgctgtttagaaagggaaagagactcaaagaggaagggaagaggagagaacct
ccaccagacactccagttgtggatcccaccatcaagtttgaacagcagacatggtacatc
gatgacacagggggaactttgcacccataccagctggaaggcctgaactggttgcgcttc
tcttgggcccaaggaaccgacacaatcttggctgatgaaatgggccttggcaagactgtg
cagactatagtgttcctgtactcactctacaaagagggtcactccaaagggccgtttctg
gtcagtgcaccactctccaccatcatcaactgggagagagagttcgagatgtgggctccg
gatttctacgtggtgacttacacaggggacaaagacagcagggccgtcatacgcgagaat
gaatttacctttgaggacagcgccgtcaaaactggtcgcaaggttttccgcatgaagaag
gacacgccgataaagtttcacgtcctgttgacatcatatgaactgatcaccattgatcag
gccatacttggctctattacctgggcatgtctggttgtggatgaagcccaccgactgaag
aataaccagtcaaagtttttcagaattctgaacggctacaaaatctactataagctgctc
ctgaccggaacccctttgcagaacaatctcgaagagctttttcacctgctcaactttctc
accccggagcgcttcaataacctggagggctttctggaggagtttgcggacatctcgaaa
gaggaccagattaaaaaactacacgacctgctggggccacacatgctcagaagactgaag
gcagatgtgtttaagaacatgccggcaaaaaccgagctcatagtgcgagtagaactcagc
cccatgcagaagaaatactacaagttcattttaacacgtaactttgaggcattgaattcc
aagggaggggggaaccaggtgtcccttcttaacatcatgatggacttgaagaaatgctgc
aaccatccctacttgtttccagtggctgcagtggaagctccggttttacccaacggttct
tacgacggtaacctcctggtgaaatcctcagggaaactcaccctgcttcagaagatgcta
aaaaaactcaaagatgaagggcacagggttcttattttctctcagatgacaaagatgctg
gatttgctagaggacttcctggagtttgagggatataaatatgagcgtattgatgggggg
atcacaggcggcctgcgacaggaggccatcgatcgatttaacgcacccggagctcagcag
ttctgttttttgctctctacacgtgctggaggattgggcatcaatctggcaaccgcagac
acagtgatcatttatgactctgactggaacccacacaatgatattcaggcattcagcagg
gcgcatcgtatagggcaaaataaaaaggtgatgatctatcgctttgtaactcgggcatcc
gtagaggagcgtattacccaggtggccaagcgaaagatgatgctgacccacctggtggtg
cgtcctggcttgggctctaagacaggctccatgtccaaacaggaactagacgacatcctc
aagtttggcactgaggagcttttcaaagacgatgtggaagctgccaggacgatgggagac
aataaagaaggagaagagggtagtgtgatacattatgacgataatgccatctctaaactc
ctggatcgtagtcaggatgccactgaagacactgaaatccagaacatgaacgagtacctg
agctcatttaaggtggctcagtatgtggtgagagaggaggatggagaggaggaggtccag
agggagattattaagcaggaagagaatgttgatccagattactgggagaagctcttgagg
catcattatgagcagcagcaggaggatctggccaggaacctgggcaaagggaaacgcatc
cgcaaacaggtcaactataatgacgcatctcaggaggatcaagaatggcaggatgatctt
tcagataatcagtcagagtactctgtcgggtccgaggatgaggatgaagattttgaggaa
cgacctgaaggaggacgcagacaatcccgcagacagttgaagagtgatcgggacaaaccg
ttgccgccgttgctggctagagttggtggaaatatagaggtattgggatttaatgcccgg
cagcggaaagccttcctgaatgcgattatgcgctggggaatgcccccacaagatgccttc
aactctcactggctggtccgtgacctgagagggaaaagtgaaaaggagttcagagcttac
gtgtctctgttcatgaggcacctgtgtgagccgggggcagatggagcagagacatttgca
gatggggtcccgagggaaggcctgtcccgccaacacgttctcactcggatcggtgtcatg
tctctggtgcgcaagaaggttcaggagtttgagcatgtaaatgggaagtttagtacacca
gatttgattcctgtgggattggagctgaaaaaactcactgaaagtgtctcatcggacccc
aacacgcctgttcctgccagtccggttccgactcaacccagcacacctgttccttcagat
aagaccgagtcgatgtccggttctcaagaagacaaggagattacagaaccagagagcacc
aaatcgctggaccctgagccagctataccagaaccctcccctgcaccagagaaaaccagt
gagggagaagagtcaaagagcggcagtccggaggagaaacgaatagaagagaatgagaag
aatgacacccttcctgtcccttcagagtcatcgtccaatcaagcacagccgcccactaag
cctagtgagcagtcagccaatcagacacctttggactgcggtaaagggaaagaaacttct
ccggagagaggggaaaataaacccagcccagcaaaattagacgaaaaggagcaaaaacca
gccattcctgatgatttaaagtctgaagaacaaattgtgagccaattgaatggagagaaa
gatgcgagggacgacacagacgagagccacagagatgacaagaacagcgtcaagactcgg
ttcatgttcaacatcgcagatggaggattcacagaattacacacattgtggcagaacgag
gaacgcgcagctgtgtcatctggcaaaatgtacgacatctggcaccgtcgccatgactac
tggctgctagctggcatcgtaacacatggctatgcccgttggcaggacattcagaatgac
ccacggtacaccattctcaatgaacctttcaagactgaaatgcacaaagggaactactta
gaaatgaagaataaatttctcgccagacgttttaagctcctggaacaggctttggtaatc
gaggagcagctacggcgcgcggcgtacctgaatatgactcaggaccccagtcacccagcc
atggccctcaacacgcgtttcgcagaggtggagtgcctggctgagtcccatcagcacctc
tccaaagagtcattggctggtaacaagccagccaatgctgtgctgcacaaagtgttgaac
cagctggaggagctgttaagcgatatgaaggctgacgtgacgcggttgccctccatgctt
tcgcgggtcccacccgtgtccgcccggctccagatgtcagagcggggcatcctcagcagg
ctcaccagccggggcaacgagccgccacctcagcagcctttccctcagggctctttcagc
tgttctcagatgtataatagtagttttgccggagggttccgtggacctggaggcacagcg
atggtgaactacagccagatgcccctggggccgtacgtcagtgtgtcctcaaatggacct
ccagcaccaagcagctacctggagaagaagtccagtgatgctctgcgagatgtggccacc
cccgatttgaaatcaggcaaacccagcgatgttatatgcatcgaggactag
DBGET
integrated database retrieval system
