Pimephales promelas (fathead minnow): 120480919
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Entry
120480919 CDS
T08155
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03008
Ribosome biogenesis in eukaryotes
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120480919 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
120480919 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120480919 (xrn2)
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120480919 (xrn2)
03009 Ribosome biogenesis [BR:
pprm03009
]
120480919 (xrn2)
03016 Transfer RNA biogenesis [BR:
pprm03016
]
120480919 (xrn2)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120480919 (xrn2)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120480919 (xrn2)
Ribosome biogenesis [BR:
pprm03009
]
Eukaryotic type
Pre-60S particles
RNases
120480919 (xrn2)
Transfer RNA biogenesis [BR:
pprm03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120480919 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Se_S_carrier
Motif
Other DBs
NCBI-GeneID:
120480919
NCBI-ProteinID:
XP_039530290
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCLEEKAKEYNGIKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGAELVEEKQKMREEVIQRGGYLPPEGVKERFDSNCITPGTEFMDNLAKCLRYYISD
RLTNDPGWRNITVFLSDASVPGEGEHKIMDFIRRQRGQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCALCNQMGHEIKDCQGLAREKRGEHDEFADKIPVSEQE
FIFIRLAVLREYLERELTMASLPFPFVFERSIDDWVFLCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVHLERVELIMQAVGVAEDNIFKKRKEDDESFKRRMKD
KKKRMKAQQQGPSFVPRGQFAPQALGGRDRPMAVQNARHTAYEMRMQGNQRNQEAAQSLR
AMIKNGKSAAETSDGAETRGVKRKADDSDSEPEPEDVVRLWEDGWKQRYYKTKFDVDATD
DEFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTDFEKGTKP
FKPLEQLMGVFPAASGNFLPTTWRALMSDPESSIIDFYPDDFAIDLNGKKYAWQGVALLP
FVDERRLRAALAQVYPELTSEEVRRNSLGSDVVFVGKSHPLCDFIQELYRAESHEATEIP
AELCHGIQGILDLDEDPILPDKPVESPIPTLRDIRSSCAIGIKFKDPQYEDGFVFKAVIL
PGAKIPSKVLKPGDFEQSNRGRWRPQLGFNPNRQQAHLDQSGFRKLNHHVGMNQGPGNFG
RGQSYEGQHSGGQYSSAPPPRSYNQGNYRPPRNNYPQNQYAWQPPASSTPYTRFQQGAQG
WDQSYQQNQQRGRGGWRPAHGQQDHRGGGGGGGGRYNWS
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcttttttccgctggttgagtcggaagtatccgtcgatagtagtacac
tgtctggaggagaaggccaaggagtacaatggaattaaaatcccagttgataccagcaaa
ccgaacccaaatgaagtggagtttgacaacttgtatctagacatgaatggaattattcac
ccgtgcacacatcctgaggacaagccagcacctaaaaatgaagatgaaatgatggttgcc
atttttgaatacattgaccgtctctttaacattgttcgaccgagacgggttctgtacatg
gcaattgatggcgtggctcctcgtgccaaaatgaaccagcagcgatcaagacgtttccgg
gcatctaaggaaggagcggagcttgtagaggaaaaacagaaaatgagagaagaagttatt
cagagaggtggttacctgccacctgagggagttaaagaacgttttgacagtaactgcatc
acccctggaaccgagttcatggataatttggccaaatgtttgcgatattacatctcagac
agactgaccaatgaccctggatggcgtaatatcacagttttcttgtcggacgccagtgtt
cctggtgaaggagagcataaaattatggatttcatcaggagacagagaggtcagccaaat
cacgacccaaacacgcatcactgtctctgtggagctgatgctgatttgataatgttgggt
ttggcgacacatgaacccaactttaccattataagagaagagtttaaacccaaccaaccc
agaccctgcgccctgtgtaatcagatgggccacgagattaaagactgtcagggtctggcc
cgagaaaaacggggcgagcatgatgaatttgcagacaaaattccagtatcagaacaggag
ttcatattcatccgactggctgtgttacgagagtatctggagagggagttaacgatggcc
agcctgccgttcccatttgtctttgagcgaagcatcgatgactgggtgtttttatgtttc
tttgtgggaaacgacttcttgccccacttaccgtctcttgagatcagagagggcgccatc
gatcgcctggttggcatctacaaagatgtcgttcataagaccgggggctacttaacagaa
aacggctttgtccatctcgagcgtgtagagctcattatgcaagccgtaggggtcgccgag
gataacatcttcaaaaagcgcaaagaggacgatgagagtttcaagcggagaatgaaggat
aagaagaaacggatgaaagcgcagcagcagggtccatcgtttgtccctcggggtcagttc
gcccctcaggctctgggcggcagagacagacccatggcagtgcagaacgccaggcacacc
gcgtatgaaatgaggatgcagggcaaccagcgcaatcaggaagcagctcagtccttgaga
gccatgatcaaaaatgggaagagtgctgctgaaaccagtgacggcgcggagactcgtggc
gtgaaacgtaaagccgatgacagtgacagcgaaccggaaccagaagatgtcgtcaggtta
tgggaggacggctggaaacagcgttactacaaaaccaaatttgatgtggatgcgacggac
gatgagtttcgtaagaaagtggtgaagtcgtacgtggagggcctgtgctgggtgctcagg
tactactatcagggttgcgcatcctggaagtggtattttccctttcattatgctccgttt
gcctccgacttcaaagacatcaagggcatgttcaccgatttcgagaaagggaccaaaccg
ttcaaacctttggagcagctcatgggtgtatttcctgccgccagtggaaactttctgccg
acgacatggagagctctgatgagtgacccagaatcctcaatcattgatttctaccctgat
gactttgccattgatttgaatgggaagaaatatgcctggcagggtgttgctttgttgccg
tttgtggacgagcggaggttacgcgcagcgttggcacaggtctaccctgaattgacctca
gaggaggtgagaaggaacagtctgggaagtgatgtcgtatttgttgggaagtcccacccc
ctgtgtgatttcatccaggaactctaccgtgcagaatctcatgaggccactgagatccct
gcagaactttgccatggaatccaaggtatattagatctagatgaagaccctattctacca
gataaaccagtggagtcacccatcccaacactgagagacatccgcagcagctgtgctatt
ggaatcaaattcaaggatccgcagtatgaagatggctttgtgttcaaggctgttatccta
ccaggggcaaagatccctagcaaggttctgaaacctggtgactttgaacagagtaaccgt
ggccgatggagacctcaactgggattcaacccaaaccgccagcaagcccatctggaccaa
tccggtttcagaaagctcaatcaccatgtgggcatgaatcaagggccgggtaattttggc
cgtggccagtcttacgagggtcagcatagtggcggtcagtacagcagtgccccacctccc
agaagctataaccaaggaaactaccgtccaccccgaaacaattaccctcaaaaccagtat
gcctggcagcctccggccagctccacaccgtataccaggttccagcagggcgctcagggc
tgggatcagtcgtaccagcagaaccagcagagaggacgaggaggctggagacccgcgcac
ggccagcaggaccaccgcggaggaggaggaggaggaggaggacgctacaactggagctga
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integrated database retrieval system
