Pimephales promelas (fathead minnow): 120481292
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Entry
120481292 CDS
T08155
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120481292 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120481292 (fip1l1b)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120481292 (fip1l1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
120481292
NCBI-ProteinID:
XP_039530807
LinkDB
All DBs
Position
Unknown
AA seq
565 aa
AA seq
DB search
MSAEEADKTTTTDASAGDEEEEWLYGDEGESKETEEEEAKLTAAISVTSAPPDTEEVTES
TETTTTTTTTTTTTTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYT
AYGGTPVNLNIKSAGSRAYGGSKVKGVDLEAPGSINGVPVLEVDVESFEEKPWRKPGADL
SDYFNYGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNSEKEITIPTHSS
KADFSTPSNLYKTGINPARMSPPHWAGPPTQEMPYYTKTPGTIDVIGGGTATISRVEGRR
RHNLEGNNIQVISEHSTSDTEPPAVAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIP
PPRMPITVPPPNFPPPTGGPPPSLIPTMDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAV
SPWPGLMDNPKQWDYYPRRDKEREKDRERDRQRERGHERDHSPTPVAYNSDEERYRSYRE
YGERGYERHRERASREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKK
SKRSKEGKEPSEEHSVDQENQEAME
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggaggcggataaaaccaccaccactgatgccagtgcaggagacgaggag
gaggaatggctgtacggggatgaaggggaaagtaaagaaactgaggaagaagaggccaaa
ctgacagcagccatcagtgtgacctctgctcctcctgatactgaggaggtcaccgagagc
accgagaccaccaccacaaccaccaccactaccactaccaccaccactactggaaatggt
gtggccagtcaggaggaagcacctggagaagatgaagacagtgagagcgatagcgatgac
gacgatgatgatgtccgtgtcaccattggagatatcaaaacaggggcgccacagtacacg
gcatatgggggaactccagtgaatctgaacataaaatcagctggcagcagagcgtatgga
ggttctaaagtgaagggcgtagacctcgaagccccaggcagcatcaatggggttccagtc
ctggaagtggatgtggagtcctttgaggagaaaccatggaggaagccaggtgcggacttg
tctgactattttaactatggttttaatgaggacacgtggaaagcgtattgtgaaaagcag
aagaggttacgcatggggctcgacattctcaacattggatccaccactagcaagatctca
gttcagcagggtcgtacaggtaacagtgagaaggagatcacaatacctactcattcatct
aaagcagacttttccactccatccaacctgtataaaacaggaatcaacccagcgaggatg
tcccctccacactgggcaggacctcccactcaagaaatgccatattatacgaagacgccc
gggaccatagatgtgattggaggaggaactgccaccattagcagggtagaaggacgacgt
cgccacaatctggaggggaataacatccaggtgatctcggaacattccacttctgacacc
gaaccgcccgcggtggctaagatgccgccacctttctttcctccagggccactccctcca
aacatcccgcctcctccattcctccctcctcctgtcagtcaggctccacctctaatcccg
cctccacggatgccaatcactgttccgcctcccaatttccctcctcccacaggaggacct
cctccttcactgatccctactatggacaacagtgggcaccctggaggatatgatggacgt
cctgttgctccatacccttttcctacaggtgggtttccaccacccatgcaaggagctgtt
agcccctggccaggtttgatggacaacccaaagcagtgggactactacccccggcgagac
aaagagagggaaaaagatcgagaaagggacaggcagagggaacgaggccacgagagagac
cacagtcccacccctgtggcttataacagtgatgaagaaaggtatcgttcttaccgtgag
tatggagaaagagggtacgagaggcatcgggagcgagcgagccgcgaaaaggaggagcgt
cacagagagaggagacacagagagaaagaggaggggaggcacaagtcatcacggagcagt
agcagacgaagacatgacagcgaggagggggacagtcaccggcgccacaagcacaagaag
tccaagaggagcaaagagggcaaggagcccagcgaggagcattctgttgaccaggagaac
caggaggctatggagtaa
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